Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_03350

Experiment: m.b. Thallium(I) acetate 0.001 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA264_03345 and CA264_03350 overlap by 14 nucleotidesCA264_03350 and CA264_03355 are separated by 98 nucleotides CA264_03345: CA264_03345 - hypothetical protein, at 783,197 to 784,594 _03345 CA264_03350: CA264_03350 - RNA polymerase subunit sigma-24, at 784,581 to 785,180 _03350 CA264_03355: CA264_03355 - VWA domain-containing protein, at 785,279 to 787,144 _03355 Position (kb) 784 785 786Strain fitness (log2 ratio) -1 0 1 2at 783.603 kb on + strand, within CA264_03345at 783.649 kb on - strand, within CA264_03345at 783.669 kb on - strand, within CA264_03345at 784.000 kb on + strand, within CA264_03345at 784.059 kb on - strand, within CA264_03345at 784.059 kb on - strand, within CA264_03345at 784.095 kb on + strand, within CA264_03345at 784.096 kb on - strand, within CA264_03345at 784.112 kb on - strand, within CA264_03345at 784.156 kb on + strand, within CA264_03345at 784.168 kb on + strand, within CA264_03345at 784.169 kb on - strand, within CA264_03345at 784.197 kb on - strand, within CA264_03345at 784.220 kb on + strand, within CA264_03345at 784.221 kb on - strand, within CA264_03345at 784.238 kb on + strand, within CA264_03345at 784.238 kb on + strand, within CA264_03345at 784.239 kb on - strand, within CA264_03345at 784.239 kb on - strand, within CA264_03345at 784.239 kb on - strand, within CA264_03345at 784.266 kb on + strand, within CA264_03345at 784.273 kb on - strand, within CA264_03345at 784.275 kb on + strand, within CA264_03345at 784.305 kb on - strand, within CA264_03345at 784.305 kb on - strand, within CA264_03345at 784.365 kb on - strand, within CA264_03345at 784.377 kb on - strand, within CA264_03345at 784.377 kb on - strand, within CA264_03345at 784.571 kb on + strandat 784.571 kb on + strandat 784.572 kb on - strandat 784.583 kb on - strandat 784.642 kb on + strand, within CA264_03350at 784.692 kb on - strand, within CA264_03350at 784.693 kb on + strand, within CA264_03350at 784.730 kb on + strand, within CA264_03350at 784.732 kb on + strand, within CA264_03350at 784.732 kb on + strand, within CA264_03350at 784.732 kb on + strand, within CA264_03350at 784.732 kb on + strand, within CA264_03350at 784.945 kb on - strand, within CA264_03350at 785.044 kb on + strand, within CA264_03350at 785.188 kb on - strandat 785.190 kb on - strandat 785.190 kb on - strandat 785.236 kb on - strandat 785.255 kb on + strandat 785.255 kb on + strandat 785.256 kb on - strandat 785.451 kb on - strandat 785.459 kb on + strandat 785.460 kb on - strandat 785.529 kb on + strand, within CA264_03355at 785.529 kb on + strand, within CA264_03355at 785.530 kb on - strand, within CA264_03355at 785.530 kb on - strand, within CA264_03355at 785.559 kb on + strand, within CA264_03355at 785.559 kb on + strand, within CA264_03355at 785.559 kb on + strand, within CA264_03355at 785.560 kb on - strand, within CA264_03355at 785.627 kb on - strand, within CA264_03355at 785.627 kb on - strand, within CA264_03355at 785.679 kb on - strand, within CA264_03355at 785.691 kb on - strand, within CA264_03355at 785.732 kb on + strand, within CA264_03355at 785.733 kb on - strand, within CA264_03355at 785.739 kb on - strand, within CA264_03355at 785.767 kb on + strand, within CA264_03355at 785.863 kb on - strand, within CA264_03355at 785.894 kb on + strand, within CA264_03355at 785.894 kb on + strand, within CA264_03355at 785.895 kb on - strand, within CA264_03355at 785.899 kb on + strand, within CA264_03355at 785.899 kb on + strand, within CA264_03355at 785.903 kb on + strand, within CA264_03355at 785.903 kb on + strand, within CA264_03355at 785.903 kb on + strand, within CA264_03355at 785.904 kb on - strand, within CA264_03355at 785.904 kb on - strand, within CA264_03355at 785.904 kb on - strand, within CA264_03355at 785.904 kb on - strand, within CA264_03355at 785.946 kb on - strand, within CA264_03355at 786.170 kb on + strand, within CA264_03355at 786.170 kb on + strand, within CA264_03355

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.001 mg/ml
remove
783,603 + CA264_03345 0.29 -0.4
783,649 - CA264_03345 0.32 +2.3
783,669 - CA264_03345 0.34 -1.0
784,000 + CA264_03345 0.57 +0.3
784,059 - CA264_03345 0.62 -0.6
784,059 - CA264_03345 0.62 +0.2
784,095 + CA264_03345 0.64 -0.4
784,096 - CA264_03345 0.64 -0.1
784,112 - CA264_03345 0.65 +2.3
784,156 + CA264_03345 0.69 +0.5
784,168 + CA264_03345 0.69 +1.8
784,169 - CA264_03345 0.70 +1.9
784,197 - CA264_03345 0.72 +0.5
784,220 + CA264_03345 0.73 -0.6
784,221 - CA264_03345 0.73 -0.6
784,238 + CA264_03345 0.74 +1.1
784,238 + CA264_03345 0.74 -0.3
784,239 - CA264_03345 0.75 -1.0
784,239 - CA264_03345 0.75 +0.4
784,239 - CA264_03345 0.75 +0.5
784,266 + CA264_03345 0.76 -0.8
784,273 - CA264_03345 0.77 +1.4
784,275 + CA264_03345 0.77 -0.6
784,305 - CA264_03345 0.79 +0.2
784,305 - CA264_03345 0.79 +0.4
784,365 - CA264_03345 0.84 +1.2
784,377 - CA264_03345 0.84 -0.1
784,377 - CA264_03345 0.84 -0.9
784,571 + -0.1
784,571 + -0.4
784,572 - +0.6
784,583 - -0.4
784,642 + CA264_03350 0.10 -0.0
784,692 - CA264_03350 0.18 -0.6
784,693 + CA264_03350 0.19 -0.3
784,730 + CA264_03350 0.25 -1.3
784,732 + CA264_03350 0.25 +0.6
784,732 + CA264_03350 0.25 -0.7
784,732 + CA264_03350 0.25 -1.1
784,732 + CA264_03350 0.25 -0.5
784,945 - CA264_03350 0.61 -0.0
785,044 + CA264_03350 0.77 -1.2
785,188 - -0.1
785,190 - +0.4
785,190 - -0.5
785,236 - +0.0
785,255 + +0.5
785,255 + +0.5
785,256 - +0.0
785,451 - +0.5
785,459 + +0.7
785,460 - +0.7
785,529 + CA264_03355 0.13 -0.0
785,529 + CA264_03355 0.13 +0.4
785,530 - CA264_03355 0.13 -0.7
785,530 - CA264_03355 0.13 +0.0
785,559 + CA264_03355 0.15 -0.2
785,559 + CA264_03355 0.15 +0.3
785,559 + CA264_03355 0.15 -1.3
785,560 - CA264_03355 0.15 +0.1
785,627 - CA264_03355 0.19 -1.4
785,627 - CA264_03355 0.19 -0.3
785,679 - CA264_03355 0.21 +0.8
785,691 - CA264_03355 0.22 +0.1
785,732 + CA264_03355 0.24 -0.7
785,733 - CA264_03355 0.24 +0.1
785,739 - CA264_03355 0.25 +0.9
785,767 + CA264_03355 0.26 +0.6
785,863 - CA264_03355 0.31 -0.8
785,894 + CA264_03355 0.33 +0.1
785,894 + CA264_03355 0.33 -1.7
785,895 - CA264_03355 0.33 -0.5
785,899 + CA264_03355 0.33 -0.1
785,899 + CA264_03355 0.33 -0.0
785,903 + CA264_03355 0.33 -1.6
785,903 + CA264_03355 0.33 -0.9
785,903 + CA264_03355 0.33 +0.8
785,904 - CA264_03355 0.33 -0.2
785,904 - CA264_03355 0.33 +0.1
785,904 - CA264_03355 0.33 -0.1
785,904 - CA264_03355 0.33 -0.0
785,946 - CA264_03355 0.36 +1.2
786,170 + CA264_03355 0.48 -0.5
786,170 + CA264_03355 0.48 -0.5

Or see this region's nucleotide sequence