Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_03215

Experiment: m.b. Thallium(I) acetate 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_03210 and CA264_03215 are separated by 163 nucleotidesCA264_03215 and CA264_03220 are separated by 359 nucleotides CA264_03210: CA264_03210 - glycogen debranching protein, at 752,423 to 755,125 _03210 CA264_03215: CA264_03215 - TonB-dependent receptor, at 755,289 to 757,721 _03215 CA264_03220: CA264_03220 - hypothetical protein, at 758,081 to 758,713 _03220 Position (kb) 755 756 757 758Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 754.300 kb on + strand, within CA264_03210at 754.300 kb on + strand, within CA264_03210at 754.332 kb on + strand, within CA264_03210at 754.333 kb on - strand, within CA264_03210at 754.342 kb on + strand, within CA264_03210at 754.343 kb on - strand, within CA264_03210at 754.346 kb on - strand, within CA264_03210at 754.346 kb on - strand, within CA264_03210at 754.346 kb on - strand, within CA264_03210at 754.413 kb on + strand, within CA264_03210at 754.493 kb on + strand, within CA264_03210at 754.495 kb on + strand, within CA264_03210at 754.495 kb on + strand, within CA264_03210at 754.496 kb on - strand, within CA264_03210at 754.496 kb on - strand, within CA264_03210at 754.613 kb on + strand, within CA264_03210at 754.677 kb on + strand, within CA264_03210at 754.678 kb on - strand, within CA264_03210at 754.710 kb on - strand, within CA264_03210at 754.710 kb on - strand, within CA264_03210at 754.819 kb on - strand, within CA264_03210at 754.841 kb on + strand, within CA264_03210at 754.990 kb on + strandat 754.991 kb on - strandat 755.094 kb on + strandat 755.094 kb on + strandat 755.095 kb on - strandat 755.095 kb on - strandat 755.099 kb on + strandat 755.099 kb on + strandat 755.100 kb on - strandat 755.100 kb on - strandat 755.101 kb on + strandat 755.102 kb on - strandat 755.102 kb on - strandat 755.102 kb on - strandat 755.102 kb on - strandat 755.123 kb on + strandat 755.123 kb on + strandat 755.127 kb on + strandat 755.127 kb on + strandat 755.127 kb on + strandat 755.128 kb on - strandat 755.130 kb on - strandat 755.130 kb on - strandat 755.134 kb on - strandat 755.134 kb on - strandat 755.134 kb on - strandat 755.181 kb on + strandat 755.188 kb on + strandat 755.189 kb on - strandat 755.193 kb on + strandat 755.217 kb on - strandat 755.270 kb on + strandat 755.277 kb on - strandat 755.277 kb on - strandat 755.277 kb on - strandat 755.279 kb on + strandat 755.287 kb on + strandat 755.328 kb on - strandat 755.469 kb on - strandat 755.505 kb on - strandat 755.505 kb on - strandat 755.514 kb on - strandat 755.563 kb on + strand, within CA264_03215at 755.563 kb on + strand, within CA264_03215at 755.564 kb on - strand, within CA264_03215at 755.564 kb on - strand, within CA264_03215at 755.573 kb on - strand, within CA264_03215at 755.590 kb on + strand, within CA264_03215at 755.591 kb on - strand, within CA264_03215at 755.613 kb on + strand, within CA264_03215at 755.716 kb on + strand, within CA264_03215at 755.856 kb on + strand, within CA264_03215at 755.870 kb on - strand, within CA264_03215at 755.870 kb on - strand, within CA264_03215at 755.947 kb on + strand, within CA264_03215at 755.948 kb on - strand, within CA264_03215at 755.948 kb on - strand, within CA264_03215at 755.987 kb on - strand, within CA264_03215at 755.998 kb on + strand, within CA264_03215at 756.029 kb on - strand, within CA264_03215at 756.053 kb on - strand, within CA264_03215at 756.059 kb on - strand, within CA264_03215at 756.070 kb on + strand, within CA264_03215at 756.082 kb on - strand, within CA264_03215at 756.239 kb on - strand, within CA264_03215at 756.247 kb on + strand, within CA264_03215at 756.248 kb on - strand, within CA264_03215at 756.248 kb on - strand, within CA264_03215at 756.248 kb on - strand, within CA264_03215at 756.251 kb on + strand, within CA264_03215at 756.252 kb on - strand, within CA264_03215at 756.260 kb on + strand, within CA264_03215at 756.260 kb on + strand, within CA264_03215at 756.261 kb on - strand, within CA264_03215at 756.319 kb on + strand, within CA264_03215at 756.320 kb on - strand, within CA264_03215at 756.320 kb on - strand, within CA264_03215at 756.431 kb on - strand, within CA264_03215at 756.492 kb on - strand, within CA264_03215at 756.496 kb on + strand, within CA264_03215at 756.496 kb on + strand, within CA264_03215at 756.496 kb on + strand, within CA264_03215at 756.497 kb on - strand, within CA264_03215at 756.497 kb on - strand, within CA264_03215at 756.497 kb on - strand, within CA264_03215at 756.541 kb on + strand, within CA264_03215at 756.592 kb on + strand, within CA264_03215at 756.592 kb on + strand, within CA264_03215at 756.619 kb on + strand, within CA264_03215at 756.619 kb on + strand, within CA264_03215at 756.620 kb on - strand, within CA264_03215at 756.620 kb on - strand, within CA264_03215at 756.620 kb on - strand, within CA264_03215at 756.624 kb on - strand, within CA264_03215at 756.676 kb on + strand, within CA264_03215at 756.676 kb on + strand, within CA264_03215at 756.710 kb on + strand, within CA264_03215at 756.710 kb on + strand, within CA264_03215at 756.710 kb on + strand, within CA264_03215at 756.711 kb on - strand, within CA264_03215at 756.711 kb on - strand, within CA264_03215at 756.712 kb on + strand, within CA264_03215at 756.715 kb on + strand, within CA264_03215at 756.760 kb on + strand, within CA264_03215at 756.935 kb on + strand, within CA264_03215at 756.962 kb on - strand, within CA264_03215at 756.980 kb on - strand, within CA264_03215at 757.072 kb on + strand, within CA264_03215at 757.271 kb on - strand, within CA264_03215at 757.335 kb on - strand, within CA264_03215at 757.457 kb on + strand, within CA264_03215at 757.468 kb on + strand, within CA264_03215at 757.469 kb on - strand, within CA264_03215at 757.493 kb on + strandat 757.494 kb on - strandat 757.494 kb on - strandat 757.495 kb on + strandat 757.496 kb on - strandat 757.496 kb on - strandat 757.556 kb on + strandat 757.630 kb on - strandat 757.630 kb on - strandat 757.676 kb on + strandat 757.709 kb on - strandat 757.722 kb on - strandat 757.722 kb on - strandat 757.758 kb on - strandat 757.859 kb on - strandat 757.859 kb on - strandat 757.886 kb on + strandat 757.897 kb on + strandat 757.907 kb on + strandat 757.907 kb on + strandat 757.908 kb on - strandat 758.082 kb on + strandat 758.083 kb on - strandat 758.083 kb on - strandat 758.083 kb on - strandat 758.211 kb on + strand, within CA264_03220at 758.212 kb on - strand, within CA264_03220at 758.215 kb on - strand, within CA264_03220at 758.365 kb on - strand, within CA264_03220at 758.495 kb on + strand, within CA264_03220at 758.495 kb on + strand, within CA264_03220at 758.495 kb on + strand, within CA264_03220at 758.539 kb on + strand, within CA264_03220at 758.540 kb on - strand, within CA264_03220at 758.628 kb on - strand, within CA264_03220at 758.665 kb on + strandat 758.720 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.001 mg/ml
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754,300 + CA264_03210 0.69 -0.9
754,300 + CA264_03210 0.69 -1.4
754,332 + CA264_03210 0.71 -0.1
754,333 - CA264_03210 0.71 -0.5
754,342 + CA264_03210 0.71 -0.3
754,343 - CA264_03210 0.71 -0.2
754,346 - CA264_03210 0.71 -0.0
754,346 - CA264_03210 0.71 -0.0
754,346 - CA264_03210 0.71 +0.3
754,413 + CA264_03210 0.74 -0.1
754,493 + CA264_03210 0.77 -1.5
754,495 + CA264_03210 0.77 -1.6
754,495 + CA264_03210 0.77 -0.4
754,496 - CA264_03210 0.77 -0.3
754,496 - CA264_03210 0.77 +0.1
754,613 + CA264_03210 0.81 -0.8
754,677 + CA264_03210 0.83 -0.6
754,678 - CA264_03210 0.83 -0.5
754,710 - CA264_03210 0.85 -0.2
754,710 - CA264_03210 0.85 -1.0
754,819 - CA264_03210 0.89 +0.1
754,841 + CA264_03210 0.89 -0.3
754,990 + -0.1
754,991 - +0.3
755,094 + -0.1
755,094 + -1.6
755,095 - -0.2
755,095 - +0.6
755,099 + +0.9
755,099 + -0.2
755,100 - +0.2
755,100 - -1.1
755,101 + +2.3
755,102 - +0.8
755,102 - +0.4
755,102 - +0.1
755,102 - -0.7
755,123 + -0.3
755,123 + -0.6
755,127 + -0.2
755,127 + +0.8
755,127 + +0.0
755,128 - -0.0
755,130 - +0.8
755,130 - +1.2
755,134 - +1.1
755,134 - -0.1
755,134 - -1.0
755,181 + -0.3
755,188 + -0.7
755,189 - -0.5
755,193 + -1.6
755,217 - -1.6
755,270 + -2.3
755,277 - -0.9
755,277 - -1.8
755,277 - -0.8
755,279 + -0.3
755,287 + +0.8
755,328 - -0.5
755,469 - -1.4
755,505 - -1.3
755,505 - -1.0
755,514 - -0.9
755,563 + CA264_03215 0.11 -0.8
755,563 + CA264_03215 0.11 +1.3
755,564 - CA264_03215 0.11 -1.0
755,564 - CA264_03215 0.11 -1.5
755,573 - CA264_03215 0.12 -2.8
755,590 + CA264_03215 0.12 -1.0
755,591 - CA264_03215 0.12 -0.6
755,613 + CA264_03215 0.13 +0.4
755,716 + CA264_03215 0.18 +0.7
755,856 + CA264_03215 0.23 -1.3
755,870 - CA264_03215 0.24 -1.4
755,870 - CA264_03215 0.24 -0.2
755,947 + CA264_03215 0.27 -2.2
755,948 - CA264_03215 0.27 -0.1
755,948 - CA264_03215 0.27 -0.2
755,987 - CA264_03215 0.29 -0.0
755,998 + CA264_03215 0.29 +0.6
756,029 - CA264_03215 0.30 -0.8
756,053 - CA264_03215 0.31 -1.2
756,059 - CA264_03215 0.32 -0.2
756,070 + CA264_03215 0.32 -0.1
756,082 - CA264_03215 0.33 -0.4
756,239 - CA264_03215 0.39 -0.3
756,247 + CA264_03215 0.39 +0.4
756,248 - CA264_03215 0.39 +0.3
756,248 - CA264_03215 0.39 -0.9
756,248 - CA264_03215 0.39 -0.4
756,251 + CA264_03215 0.40 -0.1
756,252 - CA264_03215 0.40 +0.1
756,260 + CA264_03215 0.40 +0.1
756,260 + CA264_03215 0.40 -0.3
756,261 - CA264_03215 0.40 -0.9
756,319 + CA264_03215 0.42 -0.5
756,320 - CA264_03215 0.42 +1.3
756,320 - CA264_03215 0.42 +0.9
756,431 - CA264_03215 0.47 +0.4
756,492 - CA264_03215 0.49 -0.8
756,496 + CA264_03215 0.50 -0.0
756,496 + CA264_03215 0.50 -0.3
756,496 + CA264_03215 0.50 -0.4
756,497 - CA264_03215 0.50 -1.0
756,497 - CA264_03215 0.50 +0.5
756,497 - CA264_03215 0.50 +0.6
756,541 + CA264_03215 0.51 -1.9
756,592 + CA264_03215 0.54 +0.2
756,592 + CA264_03215 0.54 +0.6
756,619 + CA264_03215 0.55 -1.0
756,619 + CA264_03215 0.55 -0.4
756,620 - CA264_03215 0.55 -0.8
756,620 - CA264_03215 0.55 -0.9
756,620 - CA264_03215 0.55 -0.5
756,624 - CA264_03215 0.55 -0.7
756,676 + CA264_03215 0.57 +0.1
756,676 + CA264_03215 0.57 -0.7
756,710 + CA264_03215 0.58 -0.0
756,710 + CA264_03215 0.58 +0.5
756,710 + CA264_03215 0.58 -1.5
756,711 - CA264_03215 0.58 +0.1
756,711 - CA264_03215 0.58 -1.2
756,712 + CA264_03215 0.58 +0.3
756,715 + CA264_03215 0.59 +0.3
756,760 + CA264_03215 0.60 +0.8
756,935 + CA264_03215 0.68 -0.4
756,962 - CA264_03215 0.69 +0.1
756,980 - CA264_03215 0.70 +0.4
757,072 + CA264_03215 0.73 +1.4
757,271 - CA264_03215 0.81 -0.4
757,335 - CA264_03215 0.84 +0.0
757,457 + CA264_03215 0.89 +1.2
757,468 + CA264_03215 0.90 +0.2
757,469 - CA264_03215 0.90 -0.6
757,493 + +0.6
757,494 - +0.4
757,494 - -0.4
757,495 + -0.0
757,496 - +2.1
757,496 - -1.0
757,556 + -1.0
757,630 - -1.5
757,630 - -1.0
757,676 + +2.0
757,709 - +1.4
757,722 - -0.3
757,722 - +1.3
757,758 - +0.5
757,859 - +1.2
757,859 - +0.7
757,886 + +0.5
757,897 + +0.7
757,907 + -0.3
757,907 + -0.3
757,908 - -0.0
758,082 + -0.5
758,083 - -0.5
758,083 - -1.5
758,083 - +0.3
758,211 + CA264_03220 0.21 -1.4
758,212 - CA264_03220 0.21 -1.3
758,215 - CA264_03220 0.21 -0.3
758,365 - CA264_03220 0.45 +0.1
758,495 + CA264_03220 0.65 -0.7
758,495 + CA264_03220 0.65 -0.1
758,495 + CA264_03220 0.65 -1.7
758,539 + CA264_03220 0.72 +1.9
758,540 - CA264_03220 0.73 -0.5
758,628 - CA264_03220 0.86 -0.3
758,665 + -1.0
758,720 + +0.7

Or see this region's nucleotide sequence