Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_03025

Experiment: m.b. Thallium(I) acetate 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_03020 and CA264_03025 are separated by 434 nucleotidesCA264_03025 and CA264_03030 are separated by 289 nucleotides CA264_03020: CA264_03020 - hypothetical protein, at 696,719 to 697,711 _03020 CA264_03025: CA264_03025 - T9SS C-terminal target domain-containing protein, at 698,146 to 699,651 _03025 CA264_03030: CA264_03030 - T9SS C-terminal target domain-containing protein, at 699,941 to 702,130 _03030 Position (kb) 698 699 700Strain fitness (log2 ratio) -1 0 1 2 3 4at 697.249 kb on + strand, within CA264_03020at 697.249 kb on + strand, within CA264_03020at 697.250 kb on - strand, within CA264_03020at 697.251 kb on + strand, within CA264_03020at 697.271 kb on - strand, within CA264_03020at 697.296 kb on - strand, within CA264_03020at 697.312 kb on - strand, within CA264_03020at 697.321 kb on + strand, within CA264_03020at 697.391 kb on - strand, within CA264_03020at 697.416 kb on + strand, within CA264_03020at 697.416 kb on + strand, within CA264_03020at 697.416 kb on + strand, within CA264_03020at 697.416 kb on + strand, within CA264_03020at 697.416 kb on + strand, within CA264_03020at 697.416 kb on + strand, within CA264_03020at 697.416 kb on + strand, within CA264_03020at 697.417 kb on - strand, within CA264_03020at 697.439 kb on + strand, within CA264_03020at 697.439 kb on + strand, within CA264_03020at 697.536 kb on + strand, within CA264_03020at 697.537 kb on - strand, within CA264_03020at 697.537 kb on - strand, within CA264_03020at 697.541 kb on + strand, within CA264_03020at 697.542 kb on - strand, within CA264_03020at 697.592 kb on + strand, within CA264_03020at 697.655 kb on + strandat 697.698 kb on + strandat 697.709 kb on + strandat 697.710 kb on - strandat 697.721 kb on + strandat 697.722 kb on - strandat 697.768 kb on - strandat 697.768 kb on - strandat 697.806 kb on + strandat 697.812 kb on + strandat 697.827 kb on - strandat 697.921 kb on - strandat 697.959 kb on - strandat 698.028 kb on + strandat 698.058 kb on + strandat 698.059 kb on - strandat 698.095 kb on + strandat 698.095 kb on + strandat 698.095 kb on + strandat 698.095 kb on + strandat 698.096 kb on - strandat 698.096 kb on - strandat 698.096 kb on - strandat 698.096 kb on - strandat 698.096 kb on - strandat 698.139 kb on + strandat 698.140 kb on - strandat 698.140 kb on - strandat 698.177 kb on - strandat 698.196 kb on - strandat 698.199 kb on - strandat 698.216 kb on - strandat 698.257 kb on + strandat 698.258 kb on - strandat 698.290 kb on + strandat 698.290 kb on + strandat 698.291 kb on - strandat 698.292 kb on + strandat 698.440 kb on - strand, within CA264_03025at 698.625 kb on + strand, within CA264_03025at 698.625 kb on + strand, within CA264_03025at 698.625 kb on + strand, within CA264_03025at 698.625 kb on + strand, within CA264_03025at 698.626 kb on - strand, within CA264_03025at 698.626 kb on - strand, within CA264_03025at 698.644 kb on - strand, within CA264_03025at 698.713 kb on + strand, within CA264_03025at 698.714 kb on - strand, within CA264_03025at 698.714 kb on - strand, within CA264_03025at 698.714 kb on - strand, within CA264_03025at 698.714 kb on - strand, within CA264_03025at 698.714 kb on - strand, within CA264_03025at 698.846 kb on + strand, within CA264_03025at 698.847 kb on - strand, within CA264_03025at 698.852 kb on - strand, within CA264_03025at 698.913 kb on - strand, within CA264_03025at 698.913 kb on - strand, within CA264_03025at 698.913 kb on - strand, within CA264_03025at 698.944 kb on + strand, within CA264_03025at 698.944 kb on + strand, within CA264_03025at 698.944 kb on + strand, within CA264_03025at 698.960 kb on + strand, within CA264_03025at 698.975 kb on + strand, within CA264_03025at 698.975 kb on + strand, within CA264_03025at 698.976 kb on - strand, within CA264_03025at 698.976 kb on - strand, within CA264_03025at 699.020 kb on - strand, within CA264_03025at 699.025 kb on - strand, within CA264_03025at 699.043 kb on + strand, within CA264_03025at 699.151 kb on - strand, within CA264_03025at 699.211 kb on + strand, within CA264_03025at 699.213 kb on + strand, within CA264_03025at 699.214 kb on - strand, within CA264_03025at 699.214 kb on - strand, within CA264_03025at 699.265 kb on + strand, within CA264_03025at 699.304 kb on + strand, within CA264_03025at 699.304 kb on + strand, within CA264_03025at 699.305 kb on - strand, within CA264_03025at 699.305 kb on - strand, within CA264_03025at 699.341 kb on - strand, within CA264_03025at 699.341 kb on - strand, within CA264_03025at 699.524 kb on + strandat 699.663 kb on + strandat 699.666 kb on - strandat 699.671 kb on + strandat 699.687 kb on + strandat 699.690 kb on - strandat 699.690 kb on - strandat 699.691 kb on + strandat 699.705 kb on + strandat 699.705 kb on + strandat 699.706 kb on - strandat 699.707 kb on + strandat 699.708 kb on - strandat 699.712 kb on + strandat 699.742 kb on + strandat 699.854 kb on + strandat 699.855 kb on - strandat 699.855 kb on - strandat 699.860 kb on + strandat 699.861 kb on - strandat 699.868 kb on - strandat 699.868 kb on - strandat 700.029 kb on - strandat 700.037 kb on + strandat 700.194 kb on + strand, within CA264_03030at 700.194 kb on + strand, within CA264_03030at 700.195 kb on - strand, within CA264_03030at 700.195 kb on - strand, within CA264_03030at 700.234 kb on - strand, within CA264_03030at 700.357 kb on + strand, within CA264_03030at 700.357 kb on + strand, within CA264_03030at 700.358 kb on - strand, within CA264_03030at 700.358 kb on - strand, within CA264_03030at 700.470 kb on - strand, within CA264_03030at 700.471 kb on + strand, within CA264_03030at 700.560 kb on + strand, within CA264_03030at 700.560 kb on + strand, within CA264_03030at 700.647 kb on + strand, within CA264_03030

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.001 mg/ml
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697,249 + CA264_03020 0.53 +1.5
697,249 + CA264_03020 0.53 +2.7
697,250 - CA264_03020 0.53 -0.2
697,251 + CA264_03020 0.54 +2.4
697,271 - CA264_03020 0.56 +0.6
697,296 - CA264_03020 0.58 +0.3
697,312 - CA264_03020 0.60 +0.1
697,321 + CA264_03020 0.61 +1.7
697,391 - CA264_03020 0.68 +0.4
697,416 + CA264_03020 0.70 +4.1
697,416 + CA264_03020 0.70 +2.7
697,416 + CA264_03020 0.70 +2.1
697,416 + CA264_03020 0.70 +2.3
697,416 + CA264_03020 0.70 +1.9
697,416 + CA264_03020 0.70 +1.9
697,416 + CA264_03020 0.70 +0.4
697,417 - CA264_03020 0.70 +0.9
697,439 + CA264_03020 0.73 +2.2
697,439 + CA264_03020 0.73 +1.9
697,536 + CA264_03020 0.82 +2.2
697,537 - CA264_03020 0.82 -0.2
697,537 - CA264_03020 0.82 +0.6
697,541 + CA264_03020 0.83 +1.8
697,542 - CA264_03020 0.83 -0.1
697,592 + CA264_03020 0.88 +2.0
697,655 + +2.0
697,698 + +2.3
697,709 + +2.1
697,710 - +0.9
697,721 + +2.3
697,722 - -0.2
697,768 - -0.5
697,768 - +0.1
697,806 + +2.2
697,812 + +1.9
697,827 - +0.8
697,921 - +0.7
697,959 - +1.9
698,028 + +2.3
698,058 + +2.9
698,059 - +0.3
698,095 + +2.0
698,095 + +2.3
698,095 + +2.4
698,095 + +2.9
698,096 - -0.2
698,096 - +0.4
698,096 - -0.2
698,096 - -0.4
698,096 - +0.9
698,139 + +2.5
698,140 - +0.1
698,140 - +0.4
698,177 - -0.6
698,196 - +1.7
698,199 - +2.3
698,216 - -0.8
698,257 + +2.9
698,258 - +0.7
698,290 + +2.0
698,290 + +2.0
698,291 - +0.5
698,292 + +2.5
698,440 - CA264_03025 0.20 -0.1
698,625 + CA264_03025 0.32 +2.9
698,625 + CA264_03025 0.32 +2.6
698,625 + CA264_03025 0.32 +2.7
698,625 + CA264_03025 0.32 +2.7
698,626 - CA264_03025 0.32 +1.4
698,626 - CA264_03025 0.32 -1.1
698,644 - CA264_03025 0.33 +0.9
698,713 + CA264_03025 0.38 +2.6
698,714 - CA264_03025 0.38 +0.5
698,714 - CA264_03025 0.38 +0.7
698,714 - CA264_03025 0.38 +0.6
698,714 - CA264_03025 0.38 -1.2
698,714 - CA264_03025 0.38 +0.6
698,846 + CA264_03025 0.46 +1.5
698,847 - CA264_03025 0.47 +2.9
698,852 - CA264_03025 0.47 +0.6
698,913 - CA264_03025 0.51 +2.3
698,913 - CA264_03025 0.51 +2.0
698,913 - CA264_03025 0.51 +3.2
698,944 + CA264_03025 0.53 +2.6
698,944 + CA264_03025 0.53 +3.8
698,944 + CA264_03025 0.53 +2.0
698,960 + CA264_03025 0.54 +2.6
698,975 + CA264_03025 0.55 +2.5
698,975 + CA264_03025 0.55 +2.6
698,976 - CA264_03025 0.55 +0.9
698,976 - CA264_03025 0.55 +1.6
699,020 - CA264_03025 0.58 -0.4
699,025 - CA264_03025 0.58 +0.9
699,043 + CA264_03025 0.60 +3.7
699,151 - CA264_03025 0.67 +1.6
699,211 + CA264_03025 0.71 +2.8
699,213 + CA264_03025 0.71 +3.3
699,214 - CA264_03025 0.71 -0.4
699,214 - CA264_03025 0.71 +1.4
699,265 + CA264_03025 0.74 +1.7
699,304 + CA264_03025 0.77 +2.7
699,304 + CA264_03025 0.77 +2.7
699,305 - CA264_03025 0.77 +2.4
699,305 - CA264_03025 0.77 +1.1
699,341 - CA264_03025 0.79 +1.5
699,341 - CA264_03025 0.79 +1.1
699,524 + +2.3
699,663 + +4.0
699,666 - +0.7
699,671 + +3.0
699,687 + +2.6
699,690 - +0.5
699,690 - +0.9
699,691 + +2.6
699,705 + +2.0
699,705 + +2.5
699,706 - +1.7
699,707 + +1.9
699,708 - +0.4
699,712 + +2.8
699,742 + +1.6
699,854 + -0.3
699,855 - +0.5
699,855 - +0.4
699,860 + -0.2
699,861 - -0.6
699,868 - +1.4
699,868 - -0.6
700,029 - +0.4
700,037 + -0.1
700,194 + CA264_03030 0.12 -0.0
700,194 + CA264_03030 0.12 +1.5
700,195 - CA264_03030 0.12 -0.3
700,195 - CA264_03030 0.12 -0.2
700,234 - CA264_03030 0.13 +1.0
700,357 + CA264_03030 0.19 +0.0
700,357 + CA264_03030 0.19 -0.1
700,358 - CA264_03030 0.19 +0.3
700,358 - CA264_03030 0.19 -0.0
700,470 - CA264_03030 0.24 -0.0
700,471 + CA264_03030 0.24 -0.3
700,560 + CA264_03030 0.28 -0.0
700,560 + CA264_03030 0.28 +0.6
700,647 + CA264_03030 0.32 +0.0

Or see this region's nucleotide sequence