Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_00575

Experiment: m.b. Thallium(I) acetate 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_00570 and CA264_00575 are separated by 122 nucleotidesCA264_00575 and CA264_00580 are separated by 136 nucleotidesCA264_00580 and CA264_00585 are separated by 255 nucleotides CA264_00570: CA264_00570 - methionine--tRNA ligase, at 125,381 to 127,420 _00570 CA264_00575: CA264_00575 - MFS transporter, at 127,543 to 128,811 _00575 CA264_00580: CA264_00580 - aminoacyl-tRNA hydrolase, at 128,948 to 129,511 _00580 CA264_00585: CA264_00585 - 50S ribosomal protein L25/general stress protein Ctc, at 129,767 to 130,351 _00585 Position (kb) 127 128 129Strain fitness (log2 ratio) -2 -1 0 1 2 3at 127.102 kb on + strand, within CA264_00570at 127.102 kb on + strand, within CA264_00570at 127.102 kb on + strand, within CA264_00570at 127.443 kb on + strandat 127.496 kb on + strandat 127.497 kb on - strandat 127.517 kb on - strandat 127.518 kb on + strandat 127.519 kb on - strandat 127.519 kb on - strandat 127.519 kb on - strandat 127.522 kb on + strandat 127.522 kb on + strandat 127.523 kb on - strandat 127.523 kb on - strandat 127.523 kb on - strandat 127.527 kb on + strandat 127.610 kb on - strandat 127.628 kb on + strandat 127.628 kb on + strandat 127.758 kb on - strand, within CA264_00575at 127.769 kb on + strand, within CA264_00575at 127.769 kb on + strand, within CA264_00575at 127.770 kb on - strand, within CA264_00575at 127.770 kb on - strand, within CA264_00575at 127.807 kb on - strand, within CA264_00575at 127.845 kb on + strand, within CA264_00575at 127.846 kb on - strand, within CA264_00575at 127.846 kb on - strand, within CA264_00575at 127.875 kb on + strand, within CA264_00575at 127.879 kb on + strand, within CA264_00575at 127.924 kb on + strand, within CA264_00575at 127.942 kb on - strand, within CA264_00575at 127.977 kb on - strand, within CA264_00575at 128.055 kb on + strand, within CA264_00575at 128.055 kb on + strand, within CA264_00575at 128.056 kb on - strand, within CA264_00575at 128.056 kb on - strand, within CA264_00575at 128.056 kb on - strand, within CA264_00575at 128.057 kb on + strand, within CA264_00575at 128.057 kb on + strand, within CA264_00575at 128.057 kb on + strand, within CA264_00575at 128.058 kb on - strand, within CA264_00575at 128.058 kb on - strand, within CA264_00575at 128.072 kb on + strand, within CA264_00575at 128.140 kb on + strand, within CA264_00575at 128.307 kb on - strand, within CA264_00575at 128.311 kb on + strand, within CA264_00575at 128.415 kb on - strand, within CA264_00575at 128.520 kb on + strand, within CA264_00575at 128.525 kb on + strand, within CA264_00575at 128.526 kb on - strand, within CA264_00575at 128.528 kb on - strand, within CA264_00575at 128.566 kb on - strand, within CA264_00575at 128.630 kb on + strand, within CA264_00575at 128.666 kb on + strand, within CA264_00575at 128.688 kb on - strandat 128.741 kb on - strandat 128.815 kb on - strandat 128.820 kb on + strandat 128.846 kb on - strandat 128.922 kb on + strandat 128.924 kb on + strandat 128.927 kb on + strandat 128.928 kb on - strandat 128.950 kb on - strandat 129.511 kb on + strandat 129.593 kb on - strandat 129.646 kb on - strandat 129.646 kb on - strandat 129.673 kb on + strandat 129.683 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.001 mg/ml
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127,102 + CA264_00570 0.84 +0.1
127,102 + CA264_00570 0.84 -1.2
127,102 + CA264_00570 0.84 -1.7
127,443 + -0.4
127,496 + +0.2
127,497 - -0.8
127,517 - +0.3
127,518 + -1.9
127,519 - -0.1
127,519 - -0.1
127,519 - +0.5
127,522 + -1.0
127,522 + -0.5
127,523 - +0.2
127,523 - -1.1
127,523 - -0.5
127,527 + -0.3
127,610 - -1.1
127,628 + -0.3
127,628 + -0.2
127,758 - CA264_00575 0.17 -0.3
127,769 + CA264_00575 0.18 -0.9
127,769 + CA264_00575 0.18 -1.5
127,770 - CA264_00575 0.18 -0.8
127,770 - CA264_00575 0.18 -0.5
127,807 - CA264_00575 0.21 -0.0
127,845 + CA264_00575 0.24 -0.2
127,846 - CA264_00575 0.24 +0.2
127,846 - CA264_00575 0.24 -0.1
127,875 + CA264_00575 0.26 -0.6
127,879 + CA264_00575 0.26 -0.8
127,924 + CA264_00575 0.30 -0.2
127,942 - CA264_00575 0.31 +0.4
127,977 - CA264_00575 0.34 +0.5
128,055 + CA264_00575 0.40 -0.1
128,055 + CA264_00575 0.40 +0.2
128,056 - CA264_00575 0.40 -0.6
128,056 - CA264_00575 0.40 -0.3
128,056 - CA264_00575 0.40 -0.7
128,057 + CA264_00575 0.41 -0.1
128,057 + CA264_00575 0.41 -1.8
128,057 + CA264_00575 0.41 +0.0
128,058 - CA264_00575 0.41 -0.4
128,058 - CA264_00575 0.41 -0.2
128,072 + CA264_00575 0.42 -0.2
128,140 + CA264_00575 0.47 -1.5
128,307 - CA264_00575 0.60 -0.8
128,311 + CA264_00575 0.61 -0.0
128,415 - CA264_00575 0.69 +0.5
128,520 + CA264_00575 0.77 -0.3
128,525 + CA264_00575 0.77 -0.8
128,526 - CA264_00575 0.77 +0.9
128,528 - CA264_00575 0.78 -0.2
128,566 - CA264_00575 0.81 -0.3
128,630 + CA264_00575 0.86 +0.7
128,666 + CA264_00575 0.88 +0.1
128,688 - +0.4
128,741 - +0.7
128,815 - +0.9
128,820 + +1.0
128,846 - +2.0
128,922 + +0.7
128,924 + +2.8
128,927 + +0.4
128,928 - +0.8
128,950 - +0.3
129,511 + +1.5
129,593 - -0.0
129,646 - -1.1
129,646 - -0.0
129,673 + +1.0
129,683 + +1.0

Or see this region's nucleotide sequence