Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_00120

Experiment: m.b. Thallium(I) acetate 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_00110 and CA264_00115 are separated by 164 nucleotidesCA264_00115 and CA264_00120 are separated by 113 nucleotidesCA264_00120 and CA264_00125 are separated by 169 nucleotides CA264_00110: CA264_00110 - DNA polymerase III subunit epsilon, at 32,201 to 32,899 _00110 CA264_00115: CA264_00115 - hypothetical protein, at 33,064 to 33,564 _00115 CA264_00120: CA264_00120 - hypothetical protein, at 33,678 to 34,238 _00120 CA264_00125: CA264_00125 - hypothetical protein, at 34,408 to 35,481 _00125 Position (kb) 33 34 35Strain fitness (log2 ratio) -2 -1 0 1 2at 32.744 kb on + strand, within CA264_00110at 32.752 kb on - strand, within CA264_00110at 32.771 kb on + strand, within CA264_00110at 32.772 kb on - strand, within CA264_00110at 32.772 kb on - strand, within CA264_00110at 32.774 kb on - strand, within CA264_00110at 32.829 kb on + strand, within CA264_00110at 32.872 kb on + strandat 32.929 kb on + strandat 32.951 kb on + strandat 32.955 kb on + strandat 32.974 kb on - strandat 32.982 kb on + strandat 32.985 kb on - strandat 33.028 kb on + strandat 33.029 kb on - strandat 33.029 kb on - strandat 33.033 kb on - strandat 33.108 kb on + strandat 33.109 kb on - strandat 33.162 kb on - strand, within CA264_00115at 33.210 kb on + strand, within CA264_00115at 33.211 kb on - strand, within CA264_00115at 33.211 kb on - strand, within CA264_00115at 33.212 kb on + strand, within CA264_00115at 33.213 kb on - strand, within CA264_00115at 33.218 kb on + strand, within CA264_00115at 33.219 kb on - strand, within CA264_00115at 33.219 kb on - strand, within CA264_00115at 33.237 kb on + strand, within CA264_00115at 33.326 kb on + strand, within CA264_00115at 33.326 kb on + strand, within CA264_00115at 33.327 kb on - strand, within CA264_00115at 33.329 kb on + strand, within CA264_00115at 33.329 kb on + strand, within CA264_00115at 33.333 kb on - strand, within CA264_00115at 33.373 kb on + strand, within CA264_00115at 33.373 kb on + strand, within CA264_00115at 33.374 kb on - strand, within CA264_00115at 33.374 kb on - strand, within CA264_00115at 33.375 kb on + strand, within CA264_00115at 33.375 kb on + strand, within CA264_00115at 33.375 kb on + strand, within CA264_00115at 33.376 kb on - strand, within CA264_00115at 33.376 kb on - strand, within CA264_00115at 33.425 kb on + strand, within CA264_00115at 33.470 kb on + strand, within CA264_00115at 33.513 kb on - strand, within CA264_00115at 33.513 kb on - strand, within CA264_00115at 33.577 kb on - strandat 33.577 kb on - strandat 33.600 kb on - strandat 33.605 kb on - strandat 33.607 kb on - strandat 33.642 kb on - strandat 33.643 kb on + strandat 33.692 kb on + strandat 33.746 kb on + strand, within CA264_00120at 33.754 kb on - strand, within CA264_00120at 33.780 kb on + strand, within CA264_00120at 33.781 kb on - strand, within CA264_00120at 33.815 kb on + strand, within CA264_00120at 33.815 kb on + strand, within CA264_00120at 33.815 kb on + strand, within CA264_00120at 33.816 kb on - strand, within CA264_00120at 33.816 kb on - strand, within CA264_00120at 33.816 kb on - strand, within CA264_00120at 33.846 kb on - strand, within CA264_00120at 33.909 kb on - strand, within CA264_00120at 33.950 kb on + strand, within CA264_00120at 33.955 kb on + strand, within CA264_00120at 33.970 kb on + strand, within CA264_00120at 33.986 kb on + strand, within CA264_00120at 34.007 kb on + strand, within CA264_00120at 34.007 kb on + strand, within CA264_00120at 34.007 kb on + strand, within CA264_00120at 34.026 kb on + strand, within CA264_00120at 34.026 kb on + strand, within CA264_00120at 34.027 kb on - strand, within CA264_00120at 34.045 kb on + strand, within CA264_00120at 34.049 kb on - strand, within CA264_00120at 34.054 kb on - strand, within CA264_00120at 34.056 kb on + strand, within CA264_00120at 34.057 kb on - strand, within CA264_00120at 34.107 kb on - strand, within CA264_00120at 34.119 kb on + strand, within CA264_00120at 34.120 kb on - strand, within CA264_00120at 34.122 kb on - strand, within CA264_00120at 34.171 kb on - strand, within CA264_00120at 34.171 kb on - strand, within CA264_00120at 34.184 kb on - strandat 34.222 kb on + strandat 34.236 kb on + strandat 34.237 kb on - strandat 34.259 kb on + strandat 34.325 kb on + strandat 34.339 kb on - strandat 34.344 kb on + strandat 34.344 kb on + strandat 34.345 kb on - strandat 34.345 kb on - strandat 34.356 kb on - strandat 34.421 kb on - strandat 34.435 kb on - strandat 34.435 kb on - strandat 34.438 kb on + strandat 34.438 kb on + strandat 34.438 kb on + strandat 34.490 kb on + strandat 34.490 kb on + strandat 34.491 kb on - strandat 34.491 kb on - strandat 34.491 kb on - strandat 34.491 kb on - strandat 34.493 kb on - strandat 34.493 kb on - strandat 34.513 kb on - strandat 34.513 kb on - strandat 34.581 kb on - strand, within CA264_00125at 34.590 kb on + strand, within CA264_00125at 34.590 kb on + strand, within CA264_00125at 34.590 kb on + strand, within CA264_00125at 34.591 kb on - strand, within CA264_00125at 34.591 kb on - strand, within CA264_00125at 34.594 kb on - strand, within CA264_00125at 34.613 kb on + strand, within CA264_00125at 34.676 kb on - strand, within CA264_00125at 34.734 kb on - strand, within CA264_00125at 34.740 kb on + strand, within CA264_00125at 34.740 kb on + strand, within CA264_00125at 34.740 kb on + strand, within CA264_00125at 34.740 kb on + strand, within CA264_00125at 34.741 kb on - strand, within CA264_00125at 34.741 kb on - strand, within CA264_00125at 34.916 kb on + strand, within CA264_00125at 34.916 kb on + strand, within CA264_00125at 34.916 kb on + strand, within CA264_00125at 34.917 kb on - strand, within CA264_00125at 34.917 kb on - strand, within CA264_00125at 34.921 kb on - strand, within CA264_00125at 34.952 kb on + strand, within CA264_00125at 34.953 kb on - strand, within CA264_00125at 34.975 kb on + strand, within CA264_00125at 34.990 kb on + strand, within CA264_00125at 34.994 kb on + strand, within CA264_00125at 34.994 kb on + strand, within CA264_00125at 34.995 kb on - strand, within CA264_00125at 35.009 kb on + strand, within CA264_00125at 35.009 kb on + strand, within CA264_00125at 35.010 kb on - strand, within CA264_00125at 35.086 kb on + strand, within CA264_00125at 35.086 kb on + strand, within CA264_00125at 35.086 kb on + strand, within CA264_00125at 35.086 kb on + strand, within CA264_00125at 35.086 kb on + strand, within CA264_00125at 35.087 kb on - strand, within CA264_00125at 35.087 kb on - strand, within CA264_00125at 35.087 kb on - strand, within CA264_00125at 35.087 kb on - strand, within CA264_00125at 35.167 kb on - strand, within CA264_00125at 35.197 kb on - strand, within CA264_00125

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.001 mg/ml
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32,744 + CA264_00110 0.78 -0.0
32,752 - CA264_00110 0.79 +0.8
32,771 + CA264_00110 0.82 -0.8
32,772 - CA264_00110 0.82 -1.0
32,772 - CA264_00110 0.82 +0.1
32,774 - CA264_00110 0.82 +0.2
32,829 + CA264_00110 0.90 -0.6
32,872 + -1.0
32,929 + -0.6
32,951 + -0.4
32,955 + +0.3
32,974 - +0.2
32,982 + +0.9
32,985 - +0.9
33,028 + +0.2
33,029 - +2.2
33,029 - +1.1
33,033 - -0.8
33,108 + +1.2
33,109 - -0.2
33,162 - CA264_00115 0.20 +0.3
33,210 + CA264_00115 0.29 -0.5
33,211 - CA264_00115 0.29 +0.5
33,211 - CA264_00115 0.29 -0.0
33,212 + CA264_00115 0.30 -0.1
33,213 - CA264_00115 0.30 -0.0
33,218 + CA264_00115 0.31 -0.5
33,219 - CA264_00115 0.31 +0.0
33,219 - CA264_00115 0.31 -0.0
33,237 + CA264_00115 0.35 -0.2
33,326 + CA264_00115 0.52 -0.2
33,326 + CA264_00115 0.52 -0.5
33,327 - CA264_00115 0.52 +0.8
33,329 + CA264_00115 0.53 -0.0
33,329 + CA264_00115 0.53 -0.1
33,333 - CA264_00115 0.54 +0.2
33,373 + CA264_00115 0.62 -0.5
33,373 + CA264_00115 0.62 +0.3
33,374 - CA264_00115 0.62 +0.3
33,374 - CA264_00115 0.62 +0.6
33,375 + CA264_00115 0.62 -0.3
33,375 + CA264_00115 0.62 -1.7
33,375 + CA264_00115 0.62 -0.6
33,376 - CA264_00115 0.62 +1.6
33,376 - CA264_00115 0.62 +1.5
33,425 + CA264_00115 0.72 +0.0
33,470 + CA264_00115 0.81 -0.1
33,513 - CA264_00115 0.90 +0.4
33,513 - CA264_00115 0.90 -0.0
33,577 - -0.0
33,577 - +0.1
33,600 - +0.7
33,605 - +1.1
33,607 - +0.2
33,642 - +0.3
33,643 + -0.6
33,692 + -0.3
33,746 + CA264_00120 0.12 +0.5
33,754 - CA264_00120 0.14 +0.1
33,780 + CA264_00120 0.18 -0.4
33,781 - CA264_00120 0.18 +0.1
33,815 + CA264_00120 0.24 -0.2
33,815 + CA264_00120 0.24 -0.5
33,815 + CA264_00120 0.24 -1.0
33,816 - CA264_00120 0.25 -0.8
33,816 - CA264_00120 0.25 +0.7
33,816 - CA264_00120 0.25 +0.2
33,846 - CA264_00120 0.30 -0.7
33,909 - CA264_00120 0.41 +0.0
33,950 + CA264_00120 0.48 -0.4
33,955 + CA264_00120 0.49 +0.5
33,970 + CA264_00120 0.52 -0.2
33,986 + CA264_00120 0.55 -0.1
34,007 + CA264_00120 0.59 +1.6
34,007 + CA264_00120 0.59 +0.1
34,007 + CA264_00120 0.59 +1.4
34,026 + CA264_00120 0.62 +0.8
34,026 + CA264_00120 0.62 +0.3
34,027 - CA264_00120 0.62 +2.4
34,045 + CA264_00120 0.65 +0.2
34,049 - CA264_00120 0.66 +0.0
34,054 - CA264_00120 0.67 -0.1
34,056 + CA264_00120 0.67 -0.3
34,057 - CA264_00120 0.68 -0.6
34,107 - CA264_00120 0.76 +0.6
34,119 + CA264_00120 0.79 +0.3
34,120 - CA264_00120 0.79 +0.0
34,122 - CA264_00120 0.79 -0.1
34,171 - CA264_00120 0.88 +1.1
34,171 - CA264_00120 0.88 +1.0
34,184 - -0.4
34,222 + +0.3
34,236 + -0.0
34,237 - -0.3
34,259 + -0.6
34,325 + -0.7
34,339 - -0.3
34,344 + +1.4
34,344 + +0.4
34,345 - -0.4
34,345 - +0.2
34,356 - -0.2
34,421 - -0.4
34,435 - -0.5
34,435 - -0.2
34,438 + +0.2
34,438 + -0.0
34,438 + +1.2
34,490 + -0.1
34,490 + -0.2
34,491 - +0.1
34,491 - -2.1
34,491 - -0.4
34,491 - +0.2
34,493 - -0.2
34,493 - -1.0
34,513 - -0.3
34,513 - -0.4
34,581 - CA264_00125 0.16 -0.1
34,590 + CA264_00125 0.17 +0.1
34,590 + CA264_00125 0.17 +0.3
34,590 + CA264_00125 0.17 -0.1
34,591 - CA264_00125 0.17 +0.8
34,591 - CA264_00125 0.17 +0.2
34,594 - CA264_00125 0.17 +0.5
34,613 + CA264_00125 0.19 +0.1
34,676 - CA264_00125 0.25 -2.3
34,734 - CA264_00125 0.30 +1.3
34,740 + CA264_00125 0.31 -0.3
34,740 + CA264_00125 0.31 -0.6
34,740 + CA264_00125 0.31 +0.1
34,740 + CA264_00125 0.31 +0.2
34,741 - CA264_00125 0.31 -0.8
34,741 - CA264_00125 0.31 -0.7
34,916 + CA264_00125 0.47 +1.5
34,916 + CA264_00125 0.47 -1.1
34,916 + CA264_00125 0.47 +0.8
34,917 - CA264_00125 0.47 -2.4
34,917 - CA264_00125 0.47 +0.4
34,921 - CA264_00125 0.48 +0.3
34,952 + CA264_00125 0.51 +0.8
34,953 - CA264_00125 0.51 +0.1
34,975 + CA264_00125 0.53 -1.3
34,990 + CA264_00125 0.54 -0.4
34,994 + CA264_00125 0.55 +0.7
34,994 + CA264_00125 0.55 +0.1
34,995 - CA264_00125 0.55 +0.4
35,009 + CA264_00125 0.56 -0.2
35,009 + CA264_00125 0.56 +0.6
35,010 - CA264_00125 0.56 -0.6
35,086 + CA264_00125 0.63 +0.3
35,086 + CA264_00125 0.63 -0.2
35,086 + CA264_00125 0.63 -0.1
35,086 + CA264_00125 0.63 +0.2
35,086 + CA264_00125 0.63 +0.4
35,087 - CA264_00125 0.63 -0.7
35,087 - CA264_00125 0.63 -0.7
35,087 - CA264_00125 0.63 -1.5
35,087 - CA264_00125 0.63 +0.6
35,167 - CA264_00125 0.71 -0.2
35,197 - CA264_00125 0.73 +0.3

Or see this region's nucleotide sequence