Strain Fitness in Agrobacterium fabrum C58 around Atu3733

Experiment: acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu3732 and Atu3733 are separated by 2 nucleotidesAtu3733 and Atu8191 are separated by 236 nucleotidesAtu8191 and Atu8192 are separated by 11 nucleotides Atu3732: Atu3732 - hemolysin, at 812,359 to 813,636 Atu3732 Atu3733: Atu3733 - hypothetical protein, at 813,639 to 813,851 Atu3733 Atu8191: Atu8191 - hypothetical protein, at 814,088 to 814,465 Atu8191 Atu8192: Atu8192 - hypothetical protein, at 814,477 to 814,749 Atu8192 Position (kb) 813 814Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 812.706 kb on - strand, within Atu3732at 812.724 kb on - strand, within Atu3732at 812.740 kb on + strand, within Atu3732at 812.769 kb on - strand, within Atu3732at 812.769 kb on - strand, within Atu3732at 812.837 kb on - strand, within Atu3732at 812.947 kb on + strand, within Atu3732at 812.955 kb on - strand, within Atu3732at 812.956 kb on + strand, within Atu3732at 813.058 kb on - strand, within Atu3732at 813.060 kb on + strand, within Atu3732at 813.060 kb on + strand, within Atu3732at 813.064 kb on + strand, within Atu3732at 813.079 kb on + strand, within Atu3732at 813.079 kb on + strand, within Atu3732at 813.079 kb on + strand, within Atu3732at 813.087 kb on - strand, within Atu3732at 813.087 kb on - strand, within Atu3732at 813.087 kb on - strand, within Atu3732at 813.087 kb on - strand, within Atu3732at 813.116 kb on + strand, within Atu3732at 813.116 kb on + strand, within Atu3732at 813.124 kb on - strand, within Atu3732at 813.124 kb on - strand, within Atu3732at 813.124 kb on - strand, within Atu3732at 813.124 kb on - strand, within Atu3732at 813.124 kb on - strand, within Atu3732at 813.222 kb on + strand, within Atu3732at 813.367 kb on + strand, within Atu3732at 813.436 kb on - strand, within Atu3732at 813.512 kb on + strandat 813.542 kb on - strandat 813.590 kb on + strandat 813.598 kb on - strandat 813.607 kb on - strandat 813.654 kb on + strandat 813.662 kb on - strand, within Atu3733at 813.780 kb on - strand, within Atu3733at 813.840 kb on - strandat 813.920 kb on + strandat 813.972 kb on - strandat 814.026 kb on + strandat 814.037 kb on + strandat 814.134 kb on - strand, within Atu8191at 814.425 kb on + strand, within Atu8191at 814.483 kb on + strandat 814.586 kb on - strand, within Atu8192at 814.824 kb on - strandat 814.826 kb on + strandat 814.847 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
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812,706 - Atu3732 0.27 -0.6
812,724 - Atu3732 0.29 -1.8
812,740 + Atu3732 0.30 -2.8
812,769 - Atu3732 0.32 -2.7
812,769 - Atu3732 0.32 -2.5
812,837 - Atu3732 0.37 -4.1
812,947 + Atu3732 0.46 -2.1
812,955 - Atu3732 0.47 -1.6
812,956 + Atu3732 0.47 -0.6
813,058 - Atu3732 0.55 -0.8
813,060 + Atu3732 0.55 -1.9
813,060 + Atu3732 0.55 -2.9
813,064 + Atu3732 0.55 -1.2
813,079 + Atu3732 0.56 -1.2
813,079 + Atu3732 0.56 -1.5
813,079 + Atu3732 0.56 -1.3
813,087 - Atu3732 0.57 +0.6
813,087 - Atu3732 0.57 -3.7
813,087 - Atu3732 0.57 -3.7
813,087 - Atu3732 0.57 +0.1
813,116 + Atu3732 0.59 -0.3
813,116 + Atu3732 0.59 -1.7
813,124 - Atu3732 0.60 -0.3
813,124 - Atu3732 0.60 -0.4
813,124 - Atu3732 0.60 -3.2
813,124 - Atu3732 0.60 +2.0
813,124 - Atu3732 0.60 -0.0
813,222 + Atu3732 0.68 -0.2
813,367 + Atu3732 0.79 -4.4
813,436 - Atu3732 0.84 -1.1
813,512 + -0.5
813,542 - -1.0
813,590 + -1.7
813,598 - +0.0
813,607 - -3.1
813,654 + -0.7
813,662 - Atu3733 0.11 -0.7
813,780 - Atu3733 0.66 +0.6
813,840 - +0.3
813,920 + -1.5
813,972 - +1.1
814,026 + -0.6
814,037 + -0.0
814,134 - Atu8191 0.12 -0.3
814,425 + Atu8191 0.89 +0.6
814,483 + +0.3
814,586 - Atu8192 0.40 -1.6
814,824 - +0.1
814,826 + -1.8
814,847 + -0.1

Or see this region's nucleotide sequence