Strain Fitness in Agrobacterium fabrum C58 around Atu0803

Experiment: acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu0802 and Atu0803 are separated by 226 nucleotidesAtu0803 and Atu0804 are separated by 954 nucleotides Atu0802: Atu0802 - hypothetical protein, at 800,273 to 801,244 Atu0802 Atu0803: Atu0803 - pyruvate,orthophosphate dikinase, at 801,471 to 804,197 Atu0803 Atu0804: Atu0804 - proton/glutamate transport protein, at 805,152 to 806,516 Atu0804 Position (kb) 801 802 803 804 805Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 800.515 kb on + strand, within Atu0802at 800.641 kb on - strand, within Atu0802at 800.706 kb on + strand, within Atu0802at 800.712 kb on + strand, within Atu0802at 800.817 kb on - strand, within Atu0802at 800.849 kb on + strand, within Atu0802at 800.876 kb on + strand, within Atu0802at 800.876 kb on + strand, within Atu0802at 800.876 kb on + strand, within Atu0802at 800.884 kb on - strand, within Atu0802at 800.910 kb on + strand, within Atu0802at 800.967 kb on + strand, within Atu0802at 801.001 kb on + strand, within Atu0802at 801.103 kb on + strand, within Atu0802at 801.122 kb on + strand, within Atu0802at 801.128 kb on + strand, within Atu0802at 801.151 kb on + strandat 801.158 kb on - strandat 801.168 kb on - strandat 801.168 kb on - strandat 801.173 kb on - strandat 801.173 kb on - strandat 801.285 kb on - strandat 801.300 kb on + strandat 801.308 kb on - strandat 801.369 kb on + strandat 801.377 kb on + strandat 801.424 kb on + strandat 801.491 kb on - strandat 801.502 kb on - strandat 801.507 kb on + strandat 801.557 kb on - strandat 801.582 kb on - strandat 801.582 kb on - strandat 801.606 kb on + strandat 801.682 kb on - strandat 801.694 kb on + strandat 801.796 kb on - strand, within Atu0803at 801.819 kb on - strand, within Atu0803at 801.973 kb on + strand, within Atu0803at 801.975 kb on + strand, within Atu0803at 802.073 kb on + strand, within Atu0803at 802.078 kb on + strand, within Atu0803at 802.088 kb on + strand, within Atu0803at 802.088 kb on + strand, within Atu0803at 802.091 kb on - strand, within Atu0803at 802.096 kb on - strand, within Atu0803at 802.147 kb on + strand, within Atu0803at 802.155 kb on + strand, within Atu0803at 802.178 kb on + strand, within Atu0803at 802.208 kb on - strand, within Atu0803at 802.261 kb on - strand, within Atu0803at 802.293 kb on + strand, within Atu0803at 802.346 kb on + strand, within Atu0803at 802.513 kb on - strand, within Atu0803at 802.523 kb on - strand, within Atu0803at 802.606 kb on - strand, within Atu0803at 802.620 kb on + strand, within Atu0803at 802.654 kb on - strand, within Atu0803at 802.687 kb on + strand, within Atu0803at 802.746 kb on - strand, within Atu0803at 802.764 kb on + strand, within Atu0803at 802.777 kb on + strand, within Atu0803at 802.961 kb on - strand, within Atu0803at 802.982 kb on - strand, within Atu0803at 802.992 kb on + strand, within Atu0803at 803.196 kb on + strand, within Atu0803at 803.272 kb on - strand, within Atu0803at 803.324 kb on + strand, within Atu0803at 803.324 kb on + strand, within Atu0803at 803.324 kb on + strand, within Atu0803at 803.332 kb on - strand, within Atu0803at 803.332 kb on - strand, within Atu0803at 803.398 kb on + strand, within Atu0803at 803.440 kb on + strand, within Atu0803at 803.509 kb on - strand, within Atu0803at 803.514 kb on - strand, within Atu0803at 803.654 kb on - strand, within Atu0803at 803.665 kb on - strand, within Atu0803at 803.877 kb on - strand, within Atu0803at 803.937 kb on + strandat 804.009 kb on + strandat 804.051 kb on + strandat 804.051 kb on + strandat 804.051 kb on + strandat 804.150 kb on - strandat 804.338 kb on + strandat 804.340 kb on - strandat 804.395 kb on - strandat 804.481 kb on - strandat 804.512 kb on - strandat 804.574 kb on + strandat 804.582 kb on - strandat 804.658 kb on + strandat 804.674 kb on - strandat 804.676 kb on - strandat 804.817 kb on - strandat 804.853 kb on - strandat 804.854 kb on - strandat 805.173 kb on + strandat 805.173 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
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800,515 + Atu0802 0.25 +0.2
800,641 - Atu0802 0.38 +0.1
800,706 + Atu0802 0.45 -0.0
800,712 + Atu0802 0.45 -0.6
800,817 - Atu0802 0.56 -0.5
800,849 + Atu0802 0.59 -0.8
800,876 + Atu0802 0.62 -0.2
800,876 + Atu0802 0.62 +0.2
800,876 + Atu0802 0.62 +1.3
800,884 - Atu0802 0.63 -0.2
800,910 + Atu0802 0.66 -0.5
800,967 + Atu0802 0.71 +0.1
801,001 + Atu0802 0.75 +0.8
801,103 + Atu0802 0.85 -1.3
801,122 + Atu0802 0.87 -0.1
801,128 + Atu0802 0.88 +0.6
801,151 + -0.1
801,158 - -0.0
801,168 - -0.5
801,168 - -0.1
801,173 - -0.3
801,173 - -0.3
801,285 - -0.1
801,300 + -0.1
801,308 - -0.2
801,369 + +1.0
801,377 + +0.6
801,424 + -0.9
801,491 - -1.4
801,502 - -5.6
801,507 + -4.2
801,557 - -3.9
801,582 - -3.4
801,582 - -2.9
801,606 + -5.2
801,682 - -0.8
801,694 + -4.1
801,796 - Atu0803 0.12 -2.8
801,819 - Atu0803 0.13 -3.8
801,973 + Atu0803 0.18 -0.0
801,975 + Atu0803 0.18 -3.9
802,073 + Atu0803 0.22 -3.0
802,078 + Atu0803 0.22 -3.2
802,088 + Atu0803 0.23 -3.6
802,088 + Atu0803 0.23 -5.0
802,091 - Atu0803 0.23 -4.9
802,096 - Atu0803 0.23 -3.8
802,147 + Atu0803 0.25 -3.5
802,155 + Atu0803 0.25 -3.0
802,178 + Atu0803 0.26 -1.8
802,208 - Atu0803 0.27 -3.5
802,261 - Atu0803 0.29 -2.9
802,293 + Atu0803 0.30 -5.8
802,346 + Atu0803 0.32 -3.9
802,513 - Atu0803 0.38 -3.5
802,523 - Atu0803 0.39 -3.5
802,606 - Atu0803 0.42 -2.5
802,620 + Atu0803 0.42 -3.5
802,654 - Atu0803 0.43 -4.8
802,687 + Atu0803 0.45 -4.8
802,746 - Atu0803 0.47 -5.3
802,764 + Atu0803 0.47 -6.0
802,777 + Atu0803 0.48 -4.4
802,961 - Atu0803 0.55 -4.9
802,982 - Atu0803 0.55 -2.8
802,992 + Atu0803 0.56 -2.8
803,196 + Atu0803 0.63 -3.9
803,272 - Atu0803 0.66 -5.1
803,324 + Atu0803 0.68 -4.7
803,324 + Atu0803 0.68 -4.4
803,324 + Atu0803 0.68 -5.2
803,332 - Atu0803 0.68 -3.6
803,332 - Atu0803 0.68 -4.1
803,398 + Atu0803 0.71 -2.3
803,440 + Atu0803 0.72 -4.4
803,509 - Atu0803 0.75 -5.2
803,514 - Atu0803 0.75 -5.1
803,654 - Atu0803 0.80 -0.4
803,665 - Atu0803 0.80 -4.9
803,877 - Atu0803 0.88 -3.3
803,937 + -4.1
804,009 + -4.4
804,051 + -6.0
804,051 + -2.8
804,051 + -4.5
804,150 - -0.0
804,338 + +0.6
804,340 - -0.0
804,395 - +0.1
804,481 - +0.0
804,512 - +0.0
804,574 + +0.1
804,582 - +0.2
804,658 + -0.5
804,674 - +0.5
804,676 - -0.1
804,817 - -0.0
804,853 - -0.5
804,854 - -0.2
805,173 + -0.1
805,173 - +0.3

Or see this region's nucleotide sequence