Experiment: acetate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0423 and Atu0424 are separated by 96 nucleotides Atu0424 and Atu0425 are separated by 32 nucleotides Atu0425 and Atu0426 are separated by 336 nucleotides Atu0426 and Atu0427 are separated by 59 nucleotides
Atu0423: Atu0423 - ABC transporter, nucleotide binding/ATPase protein, at 420,419 to 421,234
Atu0423
Atu0424: Atu0424 - phosphate transport system regulatory protein, at 421,331 to 422,056
Atu0424
Atu0425: Atu0425 - two component response regulator, at 422,089 to 422,772
Atu0425
Atu0426: Atu0426 - hypothetical protein, at 423,109 to 423,690
Atu0426
Atu0427: Atu0427 - hypothetical protein, at 423,750 to 423,998
Atu0427
Position (kb) 422
423 Strain fitness (log2 ratio) -2
-1
0
1 at 421.287 kb on - strand at 421.317 kb on - strand at 421.329 kb on + strand at 422.035 kb on + strand at 422.046 kb on - strand at 422.069 kb on + strand at 422.071 kb on - strand at 422.079 kb on - strand at 422.882 kb on + strand at 422.890 kb on - strand at 422.948 kb on - strand at 422.967 kb on - strand at 423.062 kb on + strand at 423.062 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction acetate (C) remove 421,287 - -0.6 421,317 - +0.4 421,329 + -2.4 422,035 + -0.3 422,046 - -2.2 422,069 + +0.1 422,071 - -0.4 422,079 - -0.1 422,882 + +0.1 422,890 - +0.1 422,948 - +0.2 422,967 - -0.1 423,062 + +0.6 423,062 + -0.7
Or see this region's nucleotide sequence