Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS22545

Experiment: 150_initial_2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS22540 and AMB_RS22545 are separated by 99 nucleotidesAMB_RS22545 and AMB_RS22550 are separated by 58 nucleotidesAMB_RS22550 and AMB_RS22555 overlap by 4 nucleotides AMB_RS22540: AMB_RS22540 - alpha-hydroxy-acid oxidizing protein, at 4,867,425 to 4,868,579 _RS22540 AMB_RS22545: AMB_RS22545 - D-alanyl-D-alanine dipeptidase, at 4,868,679 to 4,869,248 _RS22545 AMB_RS22550: AMB_RS22550 - tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB, at 4,869,307 to 4,869,963 _RS22550 AMB_RS22555: AMB_RS22555 - N-acetyltransferase, at 4,869,960 to 4,870,439 _RS22555 Position (kb) 4868 4869 4870Strain fitness (log2 ratio) -1 0 1at 4867.682 kb on - strand, within AMB_RS22540at 4867.815 kb on + strand, within AMB_RS22540at 4867.815 kb on + strand, within AMB_RS22540at 4867.815 kb on + strand, within AMB_RS22540at 4868.058 kb on + strand, within AMB_RS22540at 4868.059 kb on - strand, within AMB_RS22540at 4868.059 kb on - strand, within AMB_RS22540at 4868.424 kb on + strand, within AMB_RS22540at 4868.424 kb on + strand, within AMB_RS22540at 4868.424 kb on + strand, within AMB_RS22540at 4868.425 kb on - strand, within AMB_RS22540at 4868.425 kb on - strand, within AMB_RS22540at 4868.425 kb on - strand, within AMB_RS22540at 4868.425 kb on - strand, within AMB_RS22540at 4868.425 kb on - strand, within AMB_RS22540at 4868.425 kb on - strand, within AMB_RS22540at 4868.425 kb on - strand, within AMB_RS22540at 4868.428 kb on - strand, within AMB_RS22540at 4868.755 kb on + strand, within AMB_RS22545at 4868.756 kb on - strand, within AMB_RS22545at 4868.776 kb on + strand, within AMB_RS22545at 4868.776 kb on + strand, within AMB_RS22545at 4868.776 kb on + strand, within AMB_RS22545at 4868.776 kb on + strand, within AMB_RS22545at 4868.776 kb on + strand, within AMB_RS22545at 4868.776 kb on + strand, within AMB_RS22545at 4868.776 kb on + strand, within AMB_RS22545at 4868.776 kb on + strand, within AMB_RS22545at 4868.777 kb on - strand, within AMB_RS22545at 4868.777 kb on - strand, within AMB_RS22545at 4868.777 kb on - strand, within AMB_RS22545at 4869.154 kb on + strand, within AMB_RS22545at 4869.155 kb on - strand, within AMB_RS22545at 4869.190 kb on + strand, within AMB_RS22545at 4869.190 kb on + strand, within AMB_RS22545at 4869.190 kb on + strand, within AMB_RS22545at 4869.191 kb on - strand, within AMB_RS22545at 4869.280 kb on + strandat 4869.280 kb on + strandat 4869.280 kb on + strandat 4869.282 kb on + strandat 4870.020 kb on - strand, within AMB_RS22555at 4870.020 kb on - strand, within AMB_RS22555at 4870.020 kb on - strand, within AMB_RS22555at 4870.020 kb on - strand, within AMB_RS22555

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Per-strain Table

Position Strand Gene LocusTag Fraction 150_initial_2
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4,867,682 - AMB_RS22540 0.22 -1.4
4,867,815 + AMB_RS22540 0.34 -0.4
4,867,815 + AMB_RS22540 0.34 -1.3
4,867,815 + AMB_RS22540 0.34 -0.3
4,868,058 + AMB_RS22540 0.55 +1.2
4,868,059 - AMB_RS22540 0.55 +0.1
4,868,059 - AMB_RS22540 0.55 +0.8
4,868,424 + AMB_RS22540 0.86 -0.1
4,868,424 + AMB_RS22540 0.86 -0.5
4,868,424 + AMB_RS22540 0.86 -0.3
4,868,425 - AMB_RS22540 0.87 -0.4
4,868,425 - AMB_RS22540 0.87 +0.7
4,868,425 - AMB_RS22540 0.87 -0.2
4,868,425 - AMB_RS22540 0.87 -0.4
4,868,425 - AMB_RS22540 0.87 -0.2
4,868,425 - AMB_RS22540 0.87 -0.1
4,868,425 - AMB_RS22540 0.87 -0.1
4,868,428 - AMB_RS22540 0.87 -0.4
4,868,755 + AMB_RS22545 0.13 -0.1
4,868,756 - AMB_RS22545 0.14 +0.4
4,868,776 + AMB_RS22545 0.17 +1.6
4,868,776 + AMB_RS22545 0.17 -1.0
4,868,776 + AMB_RS22545 0.17 -0.8
4,868,776 + AMB_RS22545 0.17 -0.2
4,868,776 + AMB_RS22545 0.17 -0.0
4,868,776 + AMB_RS22545 0.17 +0.4
4,868,776 + AMB_RS22545 0.17 -0.1
4,868,776 + AMB_RS22545 0.17 +0.6
4,868,777 - AMB_RS22545 0.17 -1.4
4,868,777 - AMB_RS22545 0.17 +0.7
4,868,777 - AMB_RS22545 0.17 -0.8
4,869,154 + AMB_RS22545 0.83 -0.5
4,869,155 - AMB_RS22545 0.84 -1.2
4,869,190 + AMB_RS22545 0.90 -1.0
4,869,190 + AMB_RS22545 0.90 +0.1
4,869,190 + AMB_RS22545 0.90 +0.1
4,869,191 - AMB_RS22545 0.90 -0.7
4,869,280 + -0.7
4,869,280 + +0.4
4,869,280 + -0.1
4,869,282 + +0.2
4,870,020 - AMB_RS22555 0.12 -1.2
4,870,020 - AMB_RS22555 0.12 -0.2
4,870,020 - AMB_RS22555 0.12 -0.3
4,870,020 - AMB_RS22555 0.12 -1.2

Or see this region's nucleotide sequence