Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS17655

Experiment: 150_initial_2

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAMB_RS17650 and AMB_RS17655 overlap by 4 nucleotidesAMB_RS17655 and AMB_RS17660 overlap by 4 nucleotidesAMB_RS17660 and AMB_RS17665 are separated by 104 nucleotides AMB_RS17650: AMB_RS17650 - FtsH protease activity modulator HflK, at 3,835,334 to 3,836,467 _RS17650 AMB_RS17655: AMB_RS17655 - protease modulator HflC, at 3,836,464 to 3,837,342 _RS17655 AMB_RS17660: AMB_RS17660 - DUF2065 domain-containing protein, at 3,837,339 to 3,837,539 _RS17660 AMB_RS17665: AMB_RS17665 - PDZ domain-containing protein, at 3,837,644 to 3,839,155 _RS17665 Position (kb) 3836 3837 3838Strain fitness (log2 ratio) -1 0 1at 3837.537 kb on + strandat 3837.548 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 150_initial_2
remove
3,837,537 + -0.5
3,837,548 + +1.4

Or see this region's nucleotide sequence