Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS17210

Experiment: 150_initial_2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS17200 and AMB_RS17205 are separated by 21 nucleotidesAMB_RS17205 and AMB_RS17210 are separated by 60 nucleotidesAMB_RS17210 and AMB_RS17215 are separated by 7 nucleotidesAMB_RS17215 and AMB_RS17220 are separated by 42 nucleotides AMB_RS17200: AMB_RS17200 - DNA-binding response regulator, at 3,694,008 to 3,694,514 _RS17200 AMB_RS17205: AMB_RS17205 - hypothetical protein, at 3,694,536 to 3,695,030 _RS17205 AMB_RS17210: AMB_RS17210 - molybdenum import ATP-binding protein ModC, at 3,695,091 to 3,696,182 _RS17210 AMB_RS17215: AMB_RS17215 - molybdate ABC transporter permease subunit, at 3,696,190 to 3,696,882 _RS17215 AMB_RS17220: AMB_RS17220 - GGDEF domain-containing protein, at 3,696,925 to 3,698,199 _RS17220 Position (kb) 3695 3696 3697Strain fitness (log2 ratio) -2 -1 0 1at 3694.325 kb on + strand, within AMB_RS17200at 3694.325 kb on + strand, within AMB_RS17200at 3694.325 kb on + strand, within AMB_RS17200at 3694.325 kb on + strand, within AMB_RS17200at 3694.327 kb on + strand, within AMB_RS17200at 3694.328 kb on - strand, within AMB_RS17200at 3694.328 kb on - strand, within AMB_RS17200at 3694.328 kb on - strand, within AMB_RS17200at 3694.328 kb on - strand, within AMB_RS17200at 3694.538 kb on - strandat 3694.606 kb on + strand, within AMB_RS17205at 3694.607 kb on - strand, within AMB_RS17205at 3694.607 kb on - strand, within AMB_RS17205at 3694.646 kb on - strand, within AMB_RS17205at 3694.744 kb on + strand, within AMB_RS17205at 3694.744 kb on + strand, within AMB_RS17205at 3694.745 kb on - strand, within AMB_RS17205at 3694.745 kb on - strand, within AMB_RS17205at 3694.831 kb on + strand, within AMB_RS17205at 3694.831 kb on + strand, within AMB_RS17205at 3695.062 kb on + strandat 3695.083 kb on + strandat 3695.083 kb on + strandat 3695.085 kb on + strandat 3695.086 kb on - strandat 3695.092 kb on + strandat 3695.093 kb on - strandat 3695.488 kb on + strand, within AMB_RS17210at 3696.191 kb on + strandat 3696.904 kb on + strandat 3696.918 kb on + strandat 3696.978 kb on + strandat 3696.979 kb on - strandat 3697.004 kb on + strandat 3697.004 kb on + strandat 3697.004 kb on + strandat 3697.005 kb on - strandat 3697.005 kb on - strandat 3697.005 kb on - strandat 3697.005 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 150_initial_2
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3,694,325 + AMB_RS17200 0.63 +0.5
3,694,325 + AMB_RS17200 0.63 -0.8
3,694,325 + AMB_RS17200 0.63 -0.3
3,694,325 + AMB_RS17200 0.63 +0.2
3,694,327 + AMB_RS17200 0.63 -0.3
3,694,328 - AMB_RS17200 0.63 -0.7
3,694,328 - AMB_RS17200 0.63 -0.1
3,694,328 - AMB_RS17200 0.63 -0.6
3,694,328 - AMB_RS17200 0.63 +1.1
3,694,538 - -0.6
3,694,606 + AMB_RS17205 0.14 +0.6
3,694,607 - AMB_RS17205 0.14 +0.2
3,694,607 - AMB_RS17205 0.14 -0.9
3,694,646 - AMB_RS17205 0.22 +0.1
3,694,744 + AMB_RS17205 0.42 +0.3
3,694,744 + AMB_RS17205 0.42 -1.9
3,694,745 - AMB_RS17205 0.42 -0.3
3,694,745 - AMB_RS17205 0.42 +0.0
3,694,831 + AMB_RS17205 0.60 -0.6
3,694,831 + AMB_RS17205 0.60 -0.0
3,695,062 + -0.1
3,695,083 + +0.2
3,695,083 + -2.1
3,695,085 + +0.2
3,695,086 - -0.2
3,695,092 + -1.1
3,695,093 - -0.0
3,695,488 + AMB_RS17210 0.36 -1.2
3,696,191 + -0.0
3,696,904 + +0.0
3,696,918 + +0.4
3,696,978 + -0.9
3,696,979 - -0.4
3,697,004 + -0.1
3,697,004 + +0.4
3,697,004 + -2.1
3,697,005 - -0.1
3,697,005 - -1.0
3,697,005 - -0.0
3,697,005 - -0.1

Or see this region's nucleotide sequence