Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS16205

Experiment: 150_initial_2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS16200 and AMB_RS16205 are separated by 137 nucleotidesAMB_RS16205 and AMB_RS16210 are separated by 44 nucleotidesAMB_RS16210 and AMB_RS16215 are separated by 116 nucleotides AMB_RS16200: AMB_RS16200 - tRNA lysidine(34) synthetase TilS, at 3,474,758 to 3,476,089 _RS16200 AMB_RS16205: AMB_RS16205 - tol-pal system protein YbgF, at 3,476,227 to 3,477,294 _RS16205 AMB_RS16210: AMB_RS16210 - peptidoglycan-associated lipoprotein Pal, at 3,477,339 to 3,477,827 _RS16210 AMB_RS16215: AMB_RS16215 - peptidoglycan-associated lipoprotein Pal, at 3,477,944 to 3,478,429 _RS16215 Position (kb) 3476 3477 3478Strain fitness (log2 ratio) -2 -1 0 1at 3476.162 kb on - strandat 3477.341 kb on - strandat 3477.348 kb on + strandat 3477.349 kb on - strandat 3477.393 kb on - strand, within AMB_RS16210at 3477.430 kb on - strand, within AMB_RS16210at 3477.477 kb on + strand, within AMB_RS16210at 3477.514 kb on + strand, within AMB_RS16210at 3477.515 kb on - strand, within AMB_RS16210at 3477.562 kb on + strand, within AMB_RS16210at 3477.562 kb on + strand, within AMB_RS16210at 3477.668 kb on + strand, within AMB_RS16210at 3477.700 kb on + strand, within AMB_RS16210at 3477.701 kb on - strand, within AMB_RS16210at 3477.701 kb on - strand, within AMB_RS16210at 3477.701 kb on - strand, within AMB_RS16210at 3477.701 kb on - strand, within AMB_RS16210at 3477.810 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 150_initial_2
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3,476,162 - +0.0
3,477,341 - -1.4
3,477,348 + -0.7
3,477,349 - -0.8
3,477,393 - AMB_RS16210 0.11 -0.1
3,477,430 - AMB_RS16210 0.19 -0.3
3,477,477 + AMB_RS16210 0.28 -0.7
3,477,514 + AMB_RS16210 0.36 -0.3
3,477,515 - AMB_RS16210 0.36 -1.0
3,477,562 + AMB_RS16210 0.46 -1.0
3,477,562 + AMB_RS16210 0.46 +0.3
3,477,668 + AMB_RS16210 0.67 -2.2
3,477,700 + AMB_RS16210 0.74 -2.3
3,477,701 - AMB_RS16210 0.74 -0.7
3,477,701 - AMB_RS16210 0.74 -1.2
3,477,701 - AMB_RS16210 0.74 +0.1
3,477,701 - AMB_RS16210 0.74 -0.8
3,477,810 - -0.3

Or see this region's nucleotide sequence