Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS11305

Experiment: 150_initial_2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	150_initial_2
2,434,629	-		AMB_RS11300	0.59	-2.9
2,434,629	-		AMB_RS11300	0.59	-3.3
2,434,629	-		AMB_RS11300	0.59	+0.3
2,434,629	-		AMB_RS11300	0.59	+0.7
2,434,629	-		AMB_RS11300	0.59	-1.6
2,434,629	-		AMB_RS11300	0.59	+0.4
2,434,629	-		AMB_RS11300	0.59	-1.2
2,434,629	-		AMB_RS11300	0.59	+0.4
2,434,841	-		AMB_RS11300	0.69	-0.6
2,434,844	+		AMB_RS11300	0.69	+0.3
2,434,844	+		AMB_RS11300	0.69	-0.1
2,434,844	+		AMB_RS11300	0.69	+1.0
2,434,844	+		AMB_RS11300	0.69	+0.7
2,434,844	+		AMB_RS11300	0.69	-0.2
2,434,844	+		AMB_RS11300	0.69	+0.7
2,434,845	-		AMB_RS11300	0.69	+0.4
2,434,845	-		AMB_RS11300	0.69	+0.4
2,434,845	-		AMB_RS11300	0.69	-1.2
2,434,845	-		AMB_RS11300	0.69	-0.3
2,434,845	-		AMB_RS11300	0.69	-1.2
2,434,845	-		AMB_RS11300	0.69	-0.7
2,434,847	-		AMB_RS11300	0.69	+0.8
2,434,847	-		AMB_RS11300	0.69	+1.0
2,434,847	-		AMB_RS11300	0.69	+0.7
2,435,060	+		AMB_RS11300	0.80	+0.8
2,435,061	-		AMB_RS11300	0.80	-0.6
2,435,121	-		AMB_RS11300	0.83	+0.2
2,435,121	-		AMB_RS11300	0.83	+0.3
2,435,231	+		AMB_RS11300	0.88	+1.6
2,435,231	+		AMB_RS11300	0.88	+0.2
2,435,387	+				+0.3
2,435,387	+				-0.6
2,435,396	+				+0.6
2,435,397	-				+0.8
2,435,456	+				+0.4
2,435,477	+				+0.1
2,435,477	+				-0.2
2,435,478	-				+0.9
2,435,478	-				+0.0
2,435,478	-				-0.7
2,435,528	-				-0.7
2,435,999	-		AMB_RS11305	0.12	+0.8
2,435,999	-		AMB_RS11305	0.12	+0.2
2,436,103	+		AMB_RS11305	0.15	-1.6
2,436,103	+		AMB_RS11305	0.15	+0.3
2,436,104	-		AMB_RS11305	0.15	-0.2
2,436,104	-		AMB_RS11305	0.15	-0.1
2,436,124	+		AMB_RS11305	0.16	-1.0
2,436,124	+		AMB_RS11305	0.16	+0.5
2,436,125	-		AMB_RS11305	0.16	-0.7
2,436,125	-		AMB_RS11305	0.16	-0.2
2,436,125	-		AMB_RS11305	0.16	+0.8
2,436,356	-		AMB_RS11305	0.22	-1.8
2,436,356	-		AMB_RS11305	0.22	-1.2
2,436,463	+		AMB_RS11305	0.25	+1.2
2,436,601	+		AMB_RS11305	0.29	-0.9
2,436,601	+		AMB_RS11305	0.29	+0.3
2,436,602	-		AMB_RS11305	0.29	-0.9
2,436,853	+		AMB_RS11305	0.36	+0.8
2,436,854	-		AMB_RS11305	0.36	-0.7
2,437,001	-		AMB_RS11305	0.40	+2.8
2,437,081	+		AMB_RS11305	0.42	+0.3
2,437,081	+		AMB_RS11305	0.42	+0.7
2,437,082	-		AMB_RS11305	0.42	-1.2
2,437,082	-		AMB_RS11305	0.42	-0.2
2,437,087	+		AMB_RS11305	0.42	-0.6
2,437,087	+		AMB_RS11305	0.42	-0.2
2,437,087	+		AMB_RS11305	0.42	+2.0
2,437,088	-		AMB_RS11305	0.42	-0.2
2,437,088	-		AMB_RS11305	0.42	+0.0
2,437,088	-		AMB_RS11305	0.42	+0.5
2,437,088	-		AMB_RS11305	0.42	+0.3
2,437,088	-		AMB_RS11305	0.42	-0.6
2,437,105	+		AMB_RS11305	0.43	-1.2
2,437,160	-		AMB_RS11305	0.44	-1.5
2,437,306	-		AMB_RS11305	0.48	+0.6
2,437,429	+		AMB_RS11305	0.52	+0.4
2,437,429	+		AMB_RS11305	0.52	-0.2
2,437,429	+		AMB_RS11305	0.52	+3.2
2,437,429	+		AMB_RS11305	0.52	+0.3
2,437,430	-		AMB_RS11305	0.52	-0.0
2,437,430	-		AMB_RS11305	0.52	+0.6
2,437,430	-		AMB_RS11305	0.52	+0.2
2,437,430	-		AMB_RS11305	0.52	+1.0
2,437,431	+		AMB_RS11305	0.52	-1.6
2,437,431	+		AMB_RS11305	0.52	+0.6
2,437,432	-		AMB_RS11305	0.52	+1.4
2,437,432	-		AMB_RS11305	0.52	-1.2
2,437,432	-		AMB_RS11305	0.52	+0.0
2,437,432	-		AMB_RS11305	0.52	+1.8
2,437,552	+		AMB_RS11305	0.55	+0.9
2,437,553	-		AMB_RS11305	0.55	-1.2
2,437,553	-		AMB_RS11305	0.55	+0.4
2,437,553	-		AMB_RS11305	0.55	-2.9
2,437,583	-		AMB_RS11305	0.56	+0.1
2,437,583	-		AMB_RS11305	0.56	+0.4
2,437,583	-		AMB_RS11305	0.56	-0.4
2,437,615	+		AMB_RS11305	0.57	-0.7
2,437,615	+		AMB_RS11305	0.57	+0.1
2,437,616	-		AMB_RS11305	0.57	+0.4
2,437,616	-		AMB_RS11305	0.57	+0.1
2,438,002	+		AMB_RS11305	0.67	-0.7
2,438,002	+		AMB_RS11305	0.67	+0.2
2,438,002	+		AMB_RS11305	0.67	+0.8
2,438,002	+		AMB_RS11305	0.67	+2.8
2,438,002	+		AMB_RS11305	0.67	+1.4
2,438,002	+		AMB_RS11305	0.67	-1.4
2,438,003	-		AMB_RS11305	0.67	+0.4
2,438,069	-		AMB_RS11305	0.69	-0.2
2,438,242	+		AMB_RS11305	0.74	+0.3
2,438,242	+		AMB_RS11305	0.74	+0.0
2,438,243	-		AMB_RS11305	0.74	+0.3
2,438,243	-		AMB_RS11305	0.74	+0.6
2,438,243	-		AMB_RS11305	0.74	+0.6
2,438,243	-		AMB_RS11305	0.74	-0.6
2,438,417	-		AMB_RS11305	0.79	-0.2
2,438,526	+		AMB_RS11305	0.82	+1.4
2,438,526	+		AMB_RS11305	0.82	-2.2
2,438,527	-		AMB_RS11305	0.82	+0.8
2,438,612	-		AMB_RS11305	0.84	+0.2
2,438,612	-		AMB_RS11305	0.84	+0.6
2,438,612	-		AMB_RS11305	0.84	+0.6
2,439,077	-				-0.2
2,439,166	+				-3.3
2,439,166	+				-0.1
2,439,166	+				+0.1
2,439,166	+				+0.8
2,439,166	+				+0.6
2,439,166	+				-2.2
2,439,166	+				-0.2
2,439,166	+				+0.7
2,439,167	-				+1.2
2,439,167	-				+0.7
2,439,167	-				+1.4
2,439,168	+				-3.2
2,439,169	-				+0.7
2,439,280	+				-0.1
2,439,507	+		AMB_RS11310	0.13	+0.1
2,439,603	+		AMB_RS11310	0.18	-0.4
2,439,603	+		AMB_RS11310	0.18	-0.3
2,439,603	+		AMB_RS11310	0.18	+0.0
2,439,603	+		AMB_RS11310	0.18	-0.0
2,439,603	+		AMB_RS11310	0.18	-0.8
2,439,603	+		AMB_RS11310	0.18	-0.4
2,439,604	-		AMB_RS11310	0.18	-0.4
2,439,604	-		AMB_RS11310	0.18	+0.4
2,439,621	+		AMB_RS11310	0.18	-0.2
2,439,622	-		AMB_RS11310	0.18	-0.3
2,439,622	-		AMB_RS11310	0.18	-0.0
2,439,878	+		AMB_RS11310	0.30	+0.8
2,439,882	+		AMB_RS11310	0.30	-1.2
2,439,882	+		AMB_RS11310	0.30	-0.8
2,439,883	-		AMB_RS11310	0.30	-0.3
2,439,927	+		AMB_RS11310	0.32	+0.2
2,439,928	-		AMB_RS11310	0.32	-0.4
2,440,017	+		AMB_RS11310	0.36	+0.1
2,440,018	-		AMB_RS11310	0.36	-1.6
2,440,018	-		AMB_RS11310	0.36	-0.7
2,440,167	+		AMB_RS11310	0.42	-1.1
2,440,167	+		AMB_RS11310	0.42	-1.0
2,440,168	-		AMB_RS11310	0.42	+0.8
2,440,168	-		AMB_RS11310	0.42	+0.2
2,440,170	+		AMB_RS11310	0.42	-0.5