Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS08745

Experiment: 150_initial_2

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAMB_RS23320 and AMB_RS08745 are separated by 8 nucleotidesAMB_RS08745 and AMB_RS08750 are separated by 147 nucleotides AMB_RS23320: AMB_RS23320 - hypothetical protein, at 1,871,790 to 1,873,787 _RS23320 AMB_RS08745: AMB_RS08745 - hypothetical protein, at 1,873,796 to 1,874,125 _RS08745 AMB_RS08750: AMB_RS08750 - site-specific integrase, at 1,874,273 to 1,875,061 _RS08750 Position (kb) 1873 1874 1875Strain fitness (log2 ratio) -2 -1 0 1at 1872.796 kb on - strand, within AMB_RS23320at 1872.796 kb on - strand, within AMB_RS23320at 1872.796 kb on - strand, within AMB_RS23320at 1872.796 kb on - strand, within AMB_RS23320at 1872.796 kb on - strand, within AMB_RS23320at 1872.866 kb on + strand, within AMB_RS23320at 1872.898 kb on + strand, within AMB_RS23320at 1873.025 kb on + strand, within AMB_RS23320at 1873.025 kb on + strand, within AMB_RS23320at 1873.026 kb on - strand, within AMB_RS23320at 1873.026 kb on - strand, within AMB_RS23320at 1873.080 kb on + strand, within AMB_RS23320at 1873.081 kb on - strand, within AMB_RS23320at 1873.081 kb on - strand, within AMB_RS23320at 1873.081 kb on - strand, within AMB_RS23320at 1873.272 kb on + strand, within AMB_RS23320at 1873.272 kb on + strand, within AMB_RS23320at 1873.272 kb on + strand, within AMB_RS23320at 1873.272 kb on + strand, within AMB_RS23320at 1873.272 kb on + strand, within AMB_RS23320at 1873.272 kb on + strand, within AMB_RS23320at 1873.272 kb on + strand, within AMB_RS23320at 1873.273 kb on - strand, within AMB_RS23320at 1873.273 kb on - strand, within AMB_RS23320at 1873.273 kb on - strand, within AMB_RS23320at 1873.273 kb on - strand, within AMB_RS23320at 1873.273 kb on - strand, within AMB_RS23320at 1873.273 kb on - strand, within AMB_RS23320at 1873.273 kb on - strand, within AMB_RS23320at 1873.323 kb on + strand, within AMB_RS23320at 1873.323 kb on + strand, within AMB_RS23320at 1873.324 kb on - strand, within AMB_RS23320at 1873.335 kb on + strand, within AMB_RS23320at 1873.336 kb on - strand, within AMB_RS23320at 1873.446 kb on + strand, within AMB_RS23320at 1873.447 kb on - strand, within AMB_RS23320at 1873.603 kb on + strandat 1873.611 kb on + strandat 1873.612 kb on - strandat 1873.612 kb on - strandat 1873.614 kb on + strandat 1873.615 kb on - strandat 1873.615 kb on - strandat 1873.689 kb on + strandat 1873.689 kb on + strandat 1873.689 kb on + strandat 1873.690 kb on - strandat 1873.690 kb on - strandat 1873.724 kb on + strandat 1873.796 kb on - strandat 1873.811 kb on - strandat 1873.821 kb on + strandat 1873.821 kb on + strandat 1873.821 kb on + strandat 1873.821 kb on + strandat 1873.822 kb on - strandat 1873.822 kb on - strandat 1873.935 kb on + strand, within AMB_RS08745at 1873.940 kb on - strand, within AMB_RS08745at 1874.032 kb on + strand, within AMB_RS08745at 1874.032 kb on + strand, within AMB_RS08745at 1874.032 kb on + strand, within AMB_RS08745at 1874.033 kb on - strand, within AMB_RS08745at 1874.033 kb on - strand, within AMB_RS08745at 1874.033 kb on - strand, within AMB_RS08745at 1874.050 kb on + strand, within AMB_RS08745at 1874.062 kb on + strand, within AMB_RS08745at 1874.081 kb on + strand, within AMB_RS08745at 1874.081 kb on + strand, within AMB_RS08745at 1874.082 kb on - strand, within AMB_RS08745at 1874.105 kb on + strandat 1874.105 kb on + strandat 1874.105 kb on + strandat 1874.105 kb on + strandat 1874.105 kb on + strandat 1874.106 kb on - strandat 1874.106 kb on - strandat 1874.106 kb on - strandat 1874.106 kb on - strandat 1874.137 kb on + strandat 1874.137 kb on + strandat 1874.158 kb on + strandat 1874.180 kb on + strandat 1874.346 kb on + strandat 1874.346 kb on + strandat 1874.346 kb on + strandat 1874.347 kb on - strandat 1874.347 kb on - strandat 1874.347 kb on - strandat 1874.347 kb on - strandat 1874.347 kb on - strandat 1874.347 kb on - strandat 1874.445 kb on + strand, within AMB_RS08750at 1874.445 kb on + strand, within AMB_RS08750at 1874.445 kb on + strand, within AMB_RS08750at 1874.445 kb on + strand, within AMB_RS08750at 1874.445 kb on + strand, within AMB_RS08750at 1874.445 kb on + strand, within AMB_RS08750at 1874.446 kb on - strand, within AMB_RS08750at 1874.565 kb on - strand, within AMB_RS08750at 1874.565 kb on - strand, within AMB_RS08750at 1874.662 kb on + strand, within AMB_RS08750at 1874.662 kb on + strand, within AMB_RS08750at 1874.663 kb on - strand, within AMB_RS08750at 1874.663 kb on - strand, within AMB_RS08750at 1874.663 kb on - strand, within AMB_RS08750at 1874.663 kb on - strand, within AMB_RS08750at 1874.663 kb on - strand, within AMB_RS08750at 1874.663 kb on - strand, within AMB_RS08750at 1874.729 kb on + strand, within AMB_RS08750at 1874.729 kb on + strand, within AMB_RS08750at 1874.730 kb on - strand, within AMB_RS08750at 1874.730 kb on - strand, within AMB_RS08750at 1874.730 kb on - strand, within AMB_RS08750at 1874.730 kb on - strand, within AMB_RS08750at 1874.730 kb on - strand, within AMB_RS08750at 1874.786 kb on - strand, within AMB_RS08750at 1874.827 kb on + strand, within AMB_RS08750at 1874.828 kb on - strand, within AMB_RS08750at 1874.828 kb on - strand, within AMB_RS08750at 1874.828 kb on - strand, within AMB_RS08750at 1874.861 kb on - strand, within AMB_RS08750at 1874.965 kb on - strand, within AMB_RS08750at 1874.988 kb on + strandat 1874.989 kb on - strandat 1875.102 kb on - strandat 1875.102 kb on - strandat 1875.102 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 150_initial_2
remove
1,872,796 - AMB_RS23320 0.50 -0.2
1,872,796 - AMB_RS23320 0.50 -0.4
1,872,796 - AMB_RS23320 0.50 +0.9
1,872,796 - AMB_RS23320 0.50 -1.0
1,872,796 - AMB_RS23320 0.50 -0.6
1,872,866 + AMB_RS23320 0.54 -0.5
1,872,898 + AMB_RS23320 0.55 -0.3
1,873,025 + AMB_RS23320 0.62 +0.2
1,873,025 + AMB_RS23320 0.62 -0.6
1,873,026 - AMB_RS23320 0.62 +0.3
1,873,026 - AMB_RS23320 0.62 -0.2
1,873,080 + AMB_RS23320 0.65 -0.5
1,873,081 - AMB_RS23320 0.65 -0.1
1,873,081 - AMB_RS23320 0.65 -0.7
1,873,081 - AMB_RS23320 0.65 -0.4
1,873,272 + AMB_RS23320 0.74 -0.2
1,873,272 + AMB_RS23320 0.74 -0.6
1,873,272 + AMB_RS23320 0.74 +0.5
1,873,272 + AMB_RS23320 0.74 -0.3
1,873,272 + AMB_RS23320 0.74 +0.4
1,873,272 + AMB_RS23320 0.74 -0.7
1,873,272 + AMB_RS23320 0.74 -0.2
1,873,273 - AMB_RS23320 0.74 -0.6
1,873,273 - AMB_RS23320 0.74 +0.7
1,873,273 - AMB_RS23320 0.74 -0.1
1,873,273 - AMB_RS23320 0.74 -0.4
1,873,273 - AMB_RS23320 0.74 -0.1
1,873,273 - AMB_RS23320 0.74 +0.8
1,873,273 - AMB_RS23320 0.74 -0.3
1,873,323 + AMB_RS23320 0.77 +1.0
1,873,323 + AMB_RS23320 0.77 +1.0
1,873,324 - AMB_RS23320 0.77 +0.4
1,873,335 + AMB_RS23320 0.77 -0.5
1,873,336 - AMB_RS23320 0.77 -0.1
1,873,446 + AMB_RS23320 0.83 -1.5
1,873,447 - AMB_RS23320 0.83 -1.0
1,873,603 + -0.5
1,873,611 + -0.2
1,873,612 - -0.5
1,873,612 - -1.2
1,873,614 + -0.2
1,873,615 - -0.3
1,873,615 - -0.2
1,873,689 + -0.0
1,873,689 + -0.1
1,873,689 + +0.0
1,873,690 - +0.9
1,873,690 - -0.6
1,873,724 + -0.2
1,873,796 - +0.6
1,873,811 - -0.3
1,873,821 + -0.1
1,873,821 + +0.3
1,873,821 + +0.2
1,873,821 + +0.1
1,873,822 - +0.1
1,873,822 - -0.2
1,873,935 + AMB_RS08745 0.42 +0.4
1,873,940 - AMB_RS08745 0.44 -0.3
1,874,032 + AMB_RS08745 0.72 -0.1
1,874,032 + AMB_RS08745 0.72 +0.4
1,874,032 + AMB_RS08745 0.72 -1.8
1,874,033 - AMB_RS08745 0.72 +0.4
1,874,033 - AMB_RS08745 0.72 -0.0
1,874,033 - AMB_RS08745 0.72 +0.1
1,874,050 + AMB_RS08745 0.77 -0.8
1,874,062 + AMB_RS08745 0.81 -1.4
1,874,081 + AMB_RS08745 0.86 -1.2
1,874,081 + AMB_RS08745 0.86 -0.4
1,874,082 - AMB_RS08745 0.87 -0.3
1,874,105 + +0.9
1,874,105 + -0.3
1,874,105 + +0.4
1,874,105 + -0.1
1,874,105 + -0.9
1,874,106 - -0.7
1,874,106 - -0.5
1,874,106 - -0.8
1,874,106 - +0.4
1,874,137 + +1.0
1,874,137 + +0.2
1,874,158 + +0.1
1,874,180 + -0.2
1,874,346 + -0.2
1,874,346 + -0.0
1,874,346 + +0.5
1,874,347 - -0.5
1,874,347 - -0.5
1,874,347 - -1.3
1,874,347 - -0.6
1,874,347 - +0.4
1,874,347 - +0.6
1,874,445 + AMB_RS08750 0.22 +0.8
1,874,445 + AMB_RS08750 0.22 +0.9
1,874,445 + AMB_RS08750 0.22 -0.5
1,874,445 + AMB_RS08750 0.22 +0.3
1,874,445 + AMB_RS08750 0.22 -0.6
1,874,445 + AMB_RS08750 0.22 +1.4
1,874,446 - AMB_RS08750 0.22 -0.8
1,874,565 - AMB_RS08750 0.37 -1.1
1,874,565 - AMB_RS08750 0.37 -0.8
1,874,662 + AMB_RS08750 0.49 -0.7
1,874,662 + AMB_RS08750 0.49 -1.4
1,874,663 - AMB_RS08750 0.49 -0.2
1,874,663 - AMB_RS08750 0.49 -1.2
1,874,663 - AMB_RS08750 0.49 -0.0
1,874,663 - AMB_RS08750 0.49 -0.6
1,874,663 - AMB_RS08750 0.49 -0.3
1,874,663 - AMB_RS08750 0.49 -0.3
1,874,729 + AMB_RS08750 0.58 -0.5
1,874,729 + AMB_RS08750 0.58 -0.1
1,874,730 - AMB_RS08750 0.58 -0.3
1,874,730 - AMB_RS08750 0.58 -0.1
1,874,730 - AMB_RS08750 0.58 -0.1
1,874,730 - AMB_RS08750 0.58 -0.0
1,874,730 - AMB_RS08750 0.58 -0.2
1,874,786 - AMB_RS08750 0.65 +0.6
1,874,827 + AMB_RS08750 0.70 -0.2
1,874,828 - AMB_RS08750 0.70 -1.8
1,874,828 - AMB_RS08750 0.70 -0.7
1,874,828 - AMB_RS08750 0.70 +0.9
1,874,861 - AMB_RS08750 0.75 -0.7
1,874,965 - AMB_RS08750 0.88 -2.0
1,874,988 + -0.0
1,874,989 - -0.9
1,875,102 - -0.5
1,875,102 - -0.1
1,875,102 - -0.3

Or see this region's nucleotide sequence