Strain Fitness in Magnetospirillum magneticum AMB-1

Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS08335

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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Per-strain Table

Position	Strand	LocusTag	Fraction	150_initial_2
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1,782,736	-	AMB_RS08320	0.86	-0.2
1,782,923	+	AMB_RS08325	0.15	-0.4
1,782,923	+	AMB_RS08325	0.15	+0.4
1,782,923	+	AMB_RS08325	0.15	-0.2
1,782,924	-	AMB_RS08325	0.15	-0.6
1,782,924	-	AMB_RS08325	0.15	-0.4
1,782,924	-	AMB_RS08325	0.15	+0.9
1,783,519	+	AMB_RS08330	0.82	-0.2
1,783,519	+	AMB_RS08330	0.82	-0.5
1,783,519	+	AMB_RS08330	0.82	+0.0
1,783,519	+	AMB_RS08330	0.82	-0.5
1,783,520	-	AMB_RS08330	0.82	-0.4
1,783,520	-	AMB_RS08330	0.82	-0.2
1,783,662	+			+0.3
1,783,662	+			-0.1
1,783,663	-			-0.3
1,783,668	+			-0.5
1,783,669	-			+0.5
1,783,669	-			+0.1
1,783,669	-			-0.4
1,783,669	-			-0.1
1,783,815	+			-3.1
1,783,815	+			-0.1
1,783,816	-			+0.4
1,783,826	-			-1.5
1,783,826	-			-0.5
1,783,826	-			-0.2
1,783,881	+	AMB_RS08335	0.13	-0.1
1,783,881	+	AMB_RS08335	0.13	+0.4
1,783,882	-	AMB_RS08335	0.13	-0.3
1,783,882	-	AMB_RS08335	0.13	-0.4
1,783,882	-	AMB_RS08335	0.13	-0.4
1,783,882	-	AMB_RS08335	0.13	-0.4
1,784,017	+	AMB_RS08335	0.21	+0.6
1,784,175	+	AMB_RS08335	0.30	-0.1
1,784,176	-	AMB_RS08335	0.30	-0.1
1,784,253	+	AMB_RS08335	0.34	+0.2
1,784,280	+	AMB_RS08335	0.36	+0.7
1,784,280	+	AMB_RS08335	0.36	-0.0
1,784,280	+	AMB_RS08335	0.36	-0.1
1,784,280	+	AMB_RS08335	0.36	-0.2
1,784,280	+	AMB_RS08335	0.36	+0.6
1,784,280	+	AMB_RS08335	0.36	-0.2
1,784,281	-	AMB_RS08335	0.36	+0.1
1,784,281	-	AMB_RS08335	0.36	+0.4
1,784,281	-	AMB_RS08335	0.36	-0.1
1,784,281	-	AMB_RS08335	0.36	+0.1
1,784,308	-	AMB_RS08335	0.38	-3.4
1,784,308	-	AMB_RS08335	0.38	+0.1
1,784,308	-	AMB_RS08335	0.38	-0.6
1,784,331	+	AMB_RS08335	0.39	+1.4
1,784,331	+	AMB_RS08335	0.39	-2.0
1,784,332	-	AMB_RS08335	0.39	-0.1
1,784,359	-	AMB_RS08335	0.41	+0.2
1,784,359	-	AMB_RS08335	0.41	-1.3
1,784,359	-	AMB_RS08335	0.41	+0.1
1,784,359	-	AMB_RS08335	0.41	-0.4
1,784,364	+	AMB_RS08335	0.41	-0.7
1,784,365	-	AMB_RS08335	0.41	-3.0
1,784,365	-	AMB_RS08335	0.41	+0.1
1,784,406	+	AMB_RS08335	0.43	-0.6
1,784,407	-	AMB_RS08335	0.43	-3.6
1,784,436	+	AMB_RS08335	0.45	-0.3
1,784,436	+	AMB_RS08335	0.45	-0.2
1,784,436	+	AMB_RS08335	0.45	+0.2
1,784,437	-	AMB_RS08335	0.45	-0.8
1,784,437	-	AMB_RS08335	0.45	-0.0
1,784,437	-	AMB_RS08335	0.45	-0.4
1,784,463	+	AMB_RS08335	0.47	-0.4
1,784,463	+	AMB_RS08335	0.47	-1.2
1,784,463	+	AMB_RS08335	0.47	+1.0
1,784,526	+	AMB_RS08335	0.50	+0.0
1,784,526	+	AMB_RS08335	0.50	-0.0
1,784,526	+	AMB_RS08335	0.50	-0.5
1,784,526	+	AMB_RS08335	0.50	-0.0
1,784,526	+	AMB_RS08335	0.50	-0.3
1,784,526	+	AMB_RS08335	0.50	+0.1
1,784,526	+	AMB_RS08335	0.50	-1.1
1,784,526	+	AMB_RS08335	0.50	-0.1
1,784,527	-	AMB_RS08335	0.50	-0.2
1,784,527	-	AMB_RS08335	0.50	-0.5
1,784,527	-	AMB_RS08335	0.50	+0.0
1,784,527	-	AMB_RS08335	0.50	-0.0
1,784,527	-	AMB_RS08335	0.50	+0.1
1,784,527	-	AMB_RS08335	0.50	+0.0
1,784,527	-	AMB_RS08335	0.50	-0.2
1,784,547	+	AMB_RS08335	0.52	-0.8
1,784,547	+	AMB_RS08335	0.52	+0.4
1,784,547	+	AMB_RS08335	0.52	-0.5
1,784,548	-	AMB_RS08335	0.52	+0.3
1,784,548	-	AMB_RS08335	0.52	-0.4
1,784,565	+	AMB_RS08335	0.53	-0.6
1,784,565	+	AMB_RS08335	0.53	+0.2
1,784,565	+	AMB_RS08335	0.53	+1.8
1,784,598	+	AMB_RS08335	0.55	+0.1
1,784,598	+	AMB_RS08335	0.55	+1.6
1,784,598	+	AMB_RS08335	0.55	-0.8
1,784,598	+	AMB_RS08335	0.55	-0.3
1,784,599	-	AMB_RS08335	0.55	+0.5
1,784,599	-	AMB_RS08335	0.55	+0.3
1,784,799	+	AMB_RS08335	0.66	-0.6
1,784,799	+	AMB_RS08335	0.66	-0.7
1,784,800	-	AMB_RS08335	0.66	-0.1
1,785,045	+	AMB_RS08335	0.81	+0.4
1,785,045	+	AMB_RS08335	0.81	-0.4
1,785,046	-	AMB_RS08335	0.81	-0.3
1,785,046	-	AMB_RS08335	0.81	-0.4
1,785,046	-	AMB_RS08335	0.81	-0.3
1,785,385	+			-1.0
1,785,385	+			-0.8
1,785,446	+			-0.2
1,785,446	+			-0.1
1,785,447	-			+0.4
1,785,448	+			-0.0
1,785,448	+			-0.2
1,785,448	+			-0.3
1,785,448	+			+1.4
1,785,448	+			+0.0
1,785,448	+			-0.4
1,785,448	+			+1.5
1,785,448	+			-0.4
1,785,448	+			-2.5
1,785,449	-			+1.1
1,785,449	-			-0.1
1,785,449	-			+0.6
1,785,449	-			+1.7
1,785,511	+	AMB_RS08340	0.11	-0.4
1,785,511	+	AMB_RS08340	0.11	-2.0
1,785,512	-	AMB_RS08340	0.11	-0.0
1,785,512	-	AMB_RS08340	0.11	-0.6
1,785,512	-	AMB_RS08340	0.11	+1.9
1,785,535	+	AMB_RS08340	0.13	-0.1
1,785,535	+	AMB_RS08340	0.13	+0.4
1,785,535	+	AMB_RS08340	0.13	+0.3
1,785,535	+	AMB_RS08340	0.13	-0.9
1,785,536	-	AMB_RS08340	0.13	-0.9
1,785,536	-	AMB_RS08340	0.13	-0.1
1,785,536	-	AMB_RS08340	0.13	-0.3
1,785,562	+	AMB_RS08340	0.15	-0.2
1,785,563	-	AMB_RS08340	0.15	-2.2
1,785,655	+	AMB_RS08340	0.22	-0.4
1,785,763	+	AMB_RS08340	0.31	-0.6
1,785,763	+	AMB_RS08340	0.31	-0.3
1,785,763	+	AMB_RS08340	0.31	-0.6
1,785,763	+	AMB_RS08340	0.31	-0.7
1,785,763	+	AMB_RS08340	0.31	+0.1
1,785,764	-	AMB_RS08340	0.32	-0.6
1,785,764	-	AMB_RS08340	0.32	-0.4
1,785,764	-	AMB_RS08340	0.32	-1.0
1,786,120	+	AMB_RS08340	0.61	-1.1
1,786,120	+	AMB_RS08340	0.61	-0.1
1,786,120	+	AMB_RS08340	0.61	-0.0
1,786,120	+	AMB_RS08340	0.61	-0.3
1,786,120	+	AMB_RS08340	0.61	+0.5
1,786,120	+	AMB_RS08340	0.61	+0.1
1,786,121	-	AMB_RS08340	0.61	-1.0
1,786,121	-	AMB_RS08340	0.61	+0.2
1,786,121	-	AMB_RS08340	0.61	-0.2
1,786,171	+	AMB_RS08340	0.65	-0.6
1,786,171	+	AMB_RS08340	0.65	-0.3
1,786,172	-	AMB_RS08340	0.65	+0.5
1,786,172	-	AMB_RS08340	0.65	-0.2
1,786,247	-	AMB_RS08340	0.72	+1.2
1,786,291	+	AMB_RS08340	0.75	+1.9
1,786,312	+	AMB_RS08340	0.77	-0.1
1,786,312	+	AMB_RS08340	0.77	-0.0
1,786,312	+	AMB_RS08340	0.77	+0.1
1,786,312	+	AMB_RS08340	0.77	-0.2
1,786,312	+	AMB_RS08340	0.77	-3.2
1,786,313	-	AMB_RS08340	0.77	+0.5
1,786,313	-	AMB_RS08340	0.77	-0.5
1,786,313	-	AMB_RS08340	0.77	+0.4
1,786,313	-	AMB_RS08340	0.77	-0.2

Or see this region's nucleotide sequence