Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS07160

Experiment: 150_initial_2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS07155 and AMB_RS07160 are separated by 100 nucleotidesAMB_RS07160 and AMB_RS07165 are separated by 94 nucleotidesAMB_RS07165 and AMB_RS07170 are separated by 192 nucleotides AMB_RS07155: AMB_RS07155 - zinc transporter ZntB, at 1,538,710 to 1,539,732 _RS07155 AMB_RS07160: AMB_RS07160 - signal transduction protein, at 1,539,833 to 1,541,596 _RS07160 AMB_RS07165: AMB_RS07165 - hemerythrin, at 1,541,691 to 1,542,089 _RS07165 AMB_RS07170: AMB_RS07170 - hypothetical protein, at 1,542,282 to 1,542,716 _RS07170 Position (kb) 1539 1540 1541 1542Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1539.060 kb on + strand, within AMB_RS07155at 1539.060 kb on + strand, within AMB_RS07155at 1539.060 kb on + strand, within AMB_RS07155at 1539.061 kb on - strand, within AMB_RS07155at 1539.061 kb on - strand, within AMB_RS07155at 1539.061 kb on - strand, within AMB_RS07155at 1539.513 kb on + strand, within AMB_RS07155at 1539.514 kb on - strand, within AMB_RS07155at 1539.700 kb on + strandat 1539.701 kb on - strandat 1539.701 kb on - strandat 1539.701 kb on - strandat 1539.701 kb on - strandat 1539.701 kb on - strandat 1539.721 kb on - strandat 1539.749 kb on + strandat 1539.788 kb on + strandat 1539.788 kb on + strandat 1539.788 kb on + strandat 1539.788 kb on + strandat 1539.789 kb on - strandat 1539.938 kb on + strandat 1539.938 kb on + strandat 1539.938 kb on + strandat 1539.938 kb on + strandat 1539.938 kb on + strandat 1539.938 kb on + strandat 1539.938 kb on + strandat 1539.938 kb on + strandat 1539.939 kb on - strandat 1539.939 kb on - strandat 1539.939 kb on - strandat 1539.939 kb on - strandat 1539.939 kb on - strandat 1540.377 kb on - strand, within AMB_RS07160at 1540.529 kb on + strand, within AMB_RS07160at 1540.529 kb on + strand, within AMB_RS07160at 1540.529 kb on + strand, within AMB_RS07160at 1540.530 kb on - strand, within AMB_RS07160at 1540.530 kb on - strand, within AMB_RS07160at 1540.530 kb on - strand, within AMB_RS07160at 1540.530 kb on - strand, within AMB_RS07160at 1540.692 kb on - strand, within AMB_RS07160at 1540.692 kb on - strand, within AMB_RS07160at 1540.692 kb on - strand, within AMB_RS07160at 1540.692 kb on - strand, within AMB_RS07160at 1540.692 kb on - strand, within AMB_RS07160at 1540.692 kb on - strand, within AMB_RS07160at 1540.692 kb on - strand, within AMB_RS07160at 1540.692 kb on - strand, within AMB_RS07160at 1540.829 kb on + strand, within AMB_RS07160at 1540.829 kb on + strand, within AMB_RS07160at 1540.917 kb on - strand, within AMB_RS07160at 1540.917 kb on - strand, within AMB_RS07160at 1540.942 kb on + strand, within AMB_RS07160at 1540.942 kb on + strand, within AMB_RS07160at 1540.942 kb on + strand, within AMB_RS07160at 1540.943 kb on - strand, within AMB_RS07160at 1540.943 kb on - strand, within AMB_RS07160at 1541.261 kb on + strand, within AMB_RS07160at 1541.262 kb on - strand, within AMB_RS07160at 1541.262 kb on - strand, within AMB_RS07160at 1541.275 kb on + strand, within AMB_RS07160at 1541.306 kb on + strand, within AMB_RS07160at 1541.306 kb on + strand, within AMB_RS07160at 1541.306 kb on + strand, within AMB_RS07160at 1541.306 kb on + strand, within AMB_RS07160at 1541.306 kb on + strand, within AMB_RS07160at 1541.306 kb on + strand, within AMB_RS07160at 1541.307 kb on - strand, within AMB_RS07160at 1541.307 kb on - strand, within AMB_RS07160at 1541.307 kb on - strand, within AMB_RS07160at 1541.441 kb on + strandat 1541.442 kb on - strandat 1541.442 kb on - strandat 1541.442 kb on - strandat 1541.442 kb on - strandat 1541.465 kb on + strandat 1541.465 kb on + strandat 1541.465 kb on + strandat 1541.466 kb on - strandat 1541.468 kb on + strandat 1541.468 kb on + strandat 1541.468 kb on + strandat 1541.469 kb on - strandat 1541.469 kb on - strandat 1541.844 kb on + strand, within AMB_RS07165at 1541.853 kb on + strand, within AMB_RS07165at 1541.854 kb on - strand, within AMB_RS07165at 1542.193 kb on + strandat 1542.459 kb on + strand, within AMB_RS07170at 1542.459 kb on + strand, within AMB_RS07170at 1542.459 kb on + strand, within AMB_RS07170at 1542.460 kb on - strand, within AMB_RS07170at 1542.460 kb on - strand, within AMB_RS07170

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Per-strain Table

Position Strand Gene LocusTag Fraction 150_initial_2
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1,539,060 + AMB_RS07155 0.34 -0.5
1,539,060 + AMB_RS07155 0.34 +0.1
1,539,060 + AMB_RS07155 0.34 -1.0
1,539,061 - AMB_RS07155 0.34 -1.5
1,539,061 - AMB_RS07155 0.34 -0.1
1,539,061 - AMB_RS07155 0.34 +0.7
1,539,513 + AMB_RS07155 0.78 -0.8
1,539,514 - AMB_RS07155 0.79 +0.6
1,539,700 + +1.0
1,539,701 - +0.0
1,539,701 - -1.0
1,539,701 - -0.2
1,539,701 - +0.6
1,539,701 - +0.1
1,539,721 - -0.4
1,539,749 + +0.7
1,539,788 + +0.3
1,539,788 + -0.0
1,539,788 + -1.1
1,539,788 + -0.2
1,539,789 - +0.8
1,539,938 + -0.1
1,539,938 + +0.2
1,539,938 + -0.3
1,539,938 + +0.2
1,539,938 + -0.1
1,539,938 + -0.1
1,539,938 + -0.4
1,539,938 + -1.0
1,539,939 - +1.0
1,539,939 - -1.2
1,539,939 - -0.2
1,539,939 - +1.5
1,539,939 - -0.5
1,540,377 - AMB_RS07160 0.31 -0.2
1,540,529 + AMB_RS07160 0.39 -0.1
1,540,529 + AMB_RS07160 0.39 -1.1
1,540,529 + AMB_RS07160 0.39 +0.0
1,540,530 - AMB_RS07160 0.40 -1.5
1,540,530 - AMB_RS07160 0.40 -0.1
1,540,530 - AMB_RS07160 0.40 -1.3
1,540,530 - AMB_RS07160 0.40 -0.1
1,540,692 - AMB_RS07160 0.49 -0.3
1,540,692 - AMB_RS07160 0.49 -1.2
1,540,692 - AMB_RS07160 0.49 -0.5
1,540,692 - AMB_RS07160 0.49 -0.5
1,540,692 - AMB_RS07160 0.49 -1.5
1,540,692 - AMB_RS07160 0.49 +0.5
1,540,692 - AMB_RS07160 0.49 +0.1
1,540,692 - AMB_RS07160 0.49 +0.0
1,540,829 + AMB_RS07160 0.56 +0.5
1,540,829 + AMB_RS07160 0.56 -0.4
1,540,917 - AMB_RS07160 0.61 -0.2
1,540,917 - AMB_RS07160 0.61 -0.4
1,540,942 + AMB_RS07160 0.63 -0.6
1,540,942 + AMB_RS07160 0.63 -0.4
1,540,942 + AMB_RS07160 0.63 -0.0
1,540,943 - AMB_RS07160 0.63 +0.7
1,540,943 - AMB_RS07160 0.63 -1.1
1,541,261 + AMB_RS07160 0.81 -1.1
1,541,262 - AMB_RS07160 0.81 -0.1
1,541,262 - AMB_RS07160 0.81 -0.5
1,541,275 + AMB_RS07160 0.82 -2.0
1,541,306 + AMB_RS07160 0.84 -1.1
1,541,306 + AMB_RS07160 0.84 -2.8
1,541,306 + AMB_RS07160 0.84 -0.5
1,541,306 + AMB_RS07160 0.84 -1.6
1,541,306 + AMB_RS07160 0.84 -0.2
1,541,306 + AMB_RS07160 0.84 +0.1
1,541,307 - AMB_RS07160 0.84 -0.1
1,541,307 - AMB_RS07160 0.84 -0.4
1,541,307 - AMB_RS07160 0.84 -0.9
1,541,441 + -0.3
1,541,442 - +1.9
1,541,442 - +0.6
1,541,442 - +0.4
1,541,442 - -0.0
1,541,465 + -0.2
1,541,465 + +0.1
1,541,465 + -0.4
1,541,466 - +0.4
1,541,468 + -0.3
1,541,468 + +0.2
1,541,468 + -1.1
1,541,469 - -0.4
1,541,469 - -1.1
1,541,844 + AMB_RS07165 0.38 -0.1
1,541,853 + AMB_RS07165 0.41 +0.0
1,541,854 - AMB_RS07165 0.41 -0.1
1,542,193 + -0.0
1,542,459 + AMB_RS07170 0.41 -0.1
1,542,459 + AMB_RS07170 0.41 -2.0
1,542,459 + AMB_RS07170 0.41 +0.3
1,542,460 - AMB_RS07170 0.41 +0.4
1,542,460 - AMB_RS07170 0.41 -0.2

Or see this region's nucleotide sequence