Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS05155

Experiment: 150_initial_2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS05145 and AMB_RS05150 are separated by 58 nucleotidesAMB_RS05150 and AMB_RS05155 are separated by 47 nucleotidesAMB_RS05155 and AMB_RS05160 overlap by 4 nucleotidesAMB_RS05160 and AMB_RS05165 overlap by 4 nucleotides AMB_RS05145: AMB_RS05145 - hypothetical protein, at 1,065,444 to 1,066,400 _RS05145 AMB_RS05150: AMB_RS05150 - trypsin-like serine protease, at 1,066,459 to 1,067,316 _RS05150 AMB_RS05155: AMB_RS05155 - LemA family protein, at 1,067,364 to 1,068,182 _RS05155 AMB_RS05160: AMB_RS05160 - DNA-binding protein, at 1,068,179 to 1,068,433 _RS05160 AMB_RS05165: AMB_RS05165 - cation transporter, at 1,068,430 to 1,069,320 _RS05165 Position (kb) 1067 1068 1069Strain fitness (log2 ratio) -3 -2 -1 0 1at 1067.314 kb on + strandat 1067.315 kb on - strandat 1067.321 kb on - strandat 1067.321 kb on - strandat 1067.321 kb on - strandat 1067.321 kb on - strandat 1067.321 kb on - strandat 1067.321 kb on - strandat 1067.321 kb on - strandat 1067.341 kb on - strandat 1067.341 kb on - strandat 1067.341 kb on - strandat 1067.352 kb on - strandat 1067.352 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 150_initial_2
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1,067,314 + +0.1
1,067,315 - +0.2
1,067,321 - +0.9
1,067,321 - -0.3
1,067,321 - +0.4
1,067,321 - -2.2
1,067,321 - -0.0
1,067,321 - +0.6
1,067,321 - -1.2
1,067,341 - -0.4
1,067,341 - +0.1
1,067,341 - -1.9
1,067,352 - -1.8
1,067,352 - -3.2

Or see this region's nucleotide sequence