Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS04435

Experiment: 150_initial_2

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAMB_RS04425 and AMB_RS04430 are separated by 26 nucleotidesAMB_RS04430 and AMB_RS04435 are separated by 234 nucleotidesAMB_RS04435 and AMB_RS04440 are separated by 177 nucleotidesAMB_RS04440 and AMB_RS04445 are separated by 24 nucleotidesAMB_RS04445 and AMB_RS04450 are separated by 84 nucleotides AMB_RS04425: AMB_RS04425 - low molecular weight phosphotyrosine protein phosphatase, at 929,059 to 929,532 _RS04425 AMB_RS04430: AMB_RS04430 - hypothetical protein, at 929,559 to 930,002 _RS04430 AMB_RS04435: AMB_RS04435 - hypothetical protein, at 930,237 to 931,745 _RS04435 AMB_RS04440: AMB_RS04440 - hypothetical protein, at 931,923 to 932,114 _RS04440 AMB_RS04445: AMB_RS04445 - CBS domain-containing protein, at 932,139 to 932,579 _RS04445 AMB_RS04450: AMB_RS04450 - ankyrin repeat domain-containing protein, at 932,664 to 933,629 _RS04450 Position (kb) 930 931 932Strain fitness (log2 ratio) -3 -2 -1 0 1at 929.249 kb on - strand, within AMB_RS04425at 929.249 kb on - strand, within AMB_RS04425at 929.438 kb on - strand, within AMB_RS04425at 929.438 kb on - strand, within AMB_RS04425at 929.531 kb on - strandat 929.538 kb on + strandat 929.538 kb on + strandat 929.548 kb on - strandat 929.584 kb on + strandat 929.584 kb on + strandat 929.584 kb on + strandat 929.585 kb on - strandat 929.725 kb on + strand, within AMB_RS04430at 929.725 kb on + strand, within AMB_RS04430at 929.725 kb on + strand, within AMB_RS04430at 929.725 kb on + strand, within AMB_RS04430at 929.725 kb on + strand, within AMB_RS04430at 929.725 kb on + strand, within AMB_RS04430at 929.725 kb on + strand, within AMB_RS04430at 929.725 kb on + strand, within AMB_RS04430at 929.725 kb on + strand, within AMB_RS04430at 929.725 kb on + strand, within AMB_RS04430at 929.725 kb on + strand, within AMB_RS04430at 929.726 kb on - strand, within AMB_RS04430at 929.726 kb on - strand, within AMB_RS04430at 929.726 kb on - strand, within AMB_RS04430at 929.726 kb on - strand, within AMB_RS04430at 929.726 kb on - strand, within AMB_RS04430at 929.726 kb on - strand, within AMB_RS04430at 929.726 kb on - strand, within AMB_RS04430at 929.726 kb on - strand, within AMB_RS04430at 929.726 kb on - strand, within AMB_RS04430at 929.726 kb on - strand, within AMB_RS04430at 929.726 kb on - strand, within AMB_RS04430at 929.726 kb on - strand, within AMB_RS04430at 929.881 kb on + strand, within AMB_RS04430at 929.881 kb on + strand, within AMB_RS04430at 929.881 kb on + strand, within AMB_RS04430at 929.882 kb on - strand, within AMB_RS04430at 929.894 kb on - strand, within AMB_RS04430at 929.956 kb on + strand, within AMB_RS04430at 929.956 kb on + strand, within AMB_RS04430at 929.956 kb on + strand, within AMB_RS04430at 929.956 kb on + strand, within AMB_RS04430at 929.956 kb on + strand, within AMB_RS04430at 929.956 kb on + strand, within AMB_RS04430at 929.957 kb on - strand, within AMB_RS04430at 929.957 kb on - strand, within AMB_RS04430at 929.957 kb on - strand, within AMB_RS04430at 929.957 kb on - strand, within AMB_RS04430at 929.957 kb on - strand, within AMB_RS04430at 929.957 kb on - strand, within AMB_RS04430at 929.957 kb on - strand, within AMB_RS04430at 929.957 kb on - strand, within AMB_RS04430at 929.957 kb on - strand, within AMB_RS04430at 929.957 kb on - strand, within AMB_RS04430at 929.957 kb on - strand, within AMB_RS04430at 929.957 kb on - strand, within AMB_RS04430at 929.957 kb on - strand, within AMB_RS04430at 930.006 kb on + strandat 930.007 kb on - strandat 930.007 kb on - strandat 930.117 kb on + strandat 930.137 kb on + strandat 930.138 kb on - strandat 930.138 kb on - strandat 930.320 kb on + strandat 930.321 kb on - strandat 930.507 kb on + strand, within AMB_RS04435at 930.508 kb on - strand, within AMB_RS04435at 930.508 kb on - strand, within AMB_RS04435at 930.568 kb on - strand, within AMB_RS04435at 930.643 kb on + strand, within AMB_RS04435at 930.644 kb on - strand, within AMB_RS04435at 930.644 kb on - strand, within AMB_RS04435at 930.777 kb on + strand, within AMB_RS04435at 930.778 kb on - strand, within AMB_RS04435at 930.778 kb on - strand, within AMB_RS04435at 930.822 kb on + strand, within AMB_RS04435at 930.822 kb on + strand, within AMB_RS04435at 930.822 kb on + strand, within AMB_RS04435at 930.823 kb on - strand, within AMB_RS04435at 930.823 kb on - strand, within AMB_RS04435at 930.823 kb on - strand, within AMB_RS04435at 930.823 kb on - strand, within AMB_RS04435at 930.823 kb on - strand, within AMB_RS04435at 930.823 kb on - strand, within AMB_RS04435at 930.823 kb on - strand, within AMB_RS04435at 930.823 kb on - strand, within AMB_RS04435at 930.823 kb on - strand, within AMB_RS04435at 930.823 kb on - strand, within AMB_RS04435at 930.823 kb on - strand, within AMB_RS04435at 930.824 kb on + strand, within AMB_RS04435at 930.825 kb on - strand, within AMB_RS04435at 930.825 kb on - strand, within AMB_RS04435at 931.113 kb on + strand, within AMB_RS04435at 931.113 kb on + strand, within AMB_RS04435at 931.113 kb on + strand, within AMB_RS04435at 931.121 kb on + strand, within AMB_RS04435at 931.121 kb on + strand, within AMB_RS04435at 931.278 kb on + strand, within AMB_RS04435at 931.278 kb on + strand, within AMB_RS04435at 931.278 kb on + strand, within AMB_RS04435at 931.279 kb on - strand, within AMB_RS04435at 931.279 kb on - strand, within AMB_RS04435at 931.279 kb on - strand, within AMB_RS04435at 931.303 kb on + strand, within AMB_RS04435at 931.303 kb on + strand, within AMB_RS04435at 931.303 kb on + strand, within AMB_RS04435at 931.303 kb on + strand, within AMB_RS04435at 931.304 kb on - strand, within AMB_RS04435at 931.304 kb on - strand, within AMB_RS04435at 931.392 kb on + strand, within AMB_RS04435at 931.392 kb on + strand, within AMB_RS04435at 931.392 kb on + strand, within AMB_RS04435at 931.393 kb on - strand, within AMB_RS04435at 931.393 kb on - strand, within AMB_RS04435at 931.393 kb on - strand, within AMB_RS04435at 931.393 kb on - strand, within AMB_RS04435at 931.455 kb on + strand, within AMB_RS04435at 931.455 kb on + strand, within AMB_RS04435at 931.456 kb on - strand, within AMB_RS04435at 931.456 kb on - strand, within AMB_RS04435at 931.479 kb on + strand, within AMB_RS04435at 931.479 kb on + strand, within AMB_RS04435at 931.479 kb on + strand, within AMB_RS04435at 931.480 kb on - strand, within AMB_RS04435at 931.480 kb on - strand, within AMB_RS04435at 931.480 kb on - strand, within AMB_RS04435at 931.611 kb on + strandat 931.611 kb on + strandat 931.612 kb on - strandat 931.623 kb on + strandat 931.823 kb on + strandat 931.823 kb on + strandat 931.824 kb on - strandat 931.824 kb on - strandat 931.864 kb on + strandat 931.889 kb on + strandat 931.889 kb on + strandat 931.890 kb on - strandat 931.890 kb on - strandat 931.890 kb on - strandat 931.890 kb on - strandat 931.890 kb on - strandat 931.920 kb on + strandat 931.986 kb on + strand, within AMB_RS04440at 932.112 kb on + strandat 932.158 kb on + strandat 932.159 kb on - strandat 932.668 kb on + strandat 932.668 kb on + strandat 932.669 kb on - strandat 932.669 kb on - strandat 932.670 kb on + strandat 932.670 kb on + strandat 932.670 kb on + strandat 932.670 kb on + strandat 932.670 kb on + strandat 932.671 kb on - strandat 932.671 kb on - strandat 932.671 kb on - strandat 932.671 kb on - strandat 932.728 kb on + strandat 932.729 kb on - strandat 932.729 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 150_initial_2
remove
929,249 - AMB_RS04425 0.40 +0.4
929,249 - AMB_RS04425 0.40 -0.1
929,438 - AMB_RS04425 0.80 -0.5
929,438 - AMB_RS04425 0.80 +0.5
929,531 - -0.1
929,538 + -0.8
929,538 + -1.9
929,548 - -0.1
929,584 + -0.4
929,584 + -0.7
929,584 + -0.1
929,585 - -0.6
929,725 + AMB_RS04430 0.37 -1.3
929,725 + AMB_RS04430 0.37 -0.2
929,725 + AMB_RS04430 0.37 -1.2
929,725 + AMB_RS04430 0.37 +0.7
929,725 + AMB_RS04430 0.37 -1.4
929,725 + AMB_RS04430 0.37 -0.4
929,725 + AMB_RS04430 0.37 -0.9
929,725 + AMB_RS04430 0.37 +0.4
929,725 + AMB_RS04430 0.37 -1.2
929,725 + AMB_RS04430 0.37 -0.5
929,725 + AMB_RS04430 0.37 -0.8
929,726 - AMB_RS04430 0.38 -1.9
929,726 - AMB_RS04430 0.38 +0.0
929,726 - AMB_RS04430 0.38 -0.1
929,726 - AMB_RS04430 0.38 -0.4
929,726 - AMB_RS04430 0.38 -0.5
929,726 - AMB_RS04430 0.38 -0.7
929,726 - AMB_RS04430 0.38 -0.5
929,726 - AMB_RS04430 0.38 +0.3
929,726 - AMB_RS04430 0.38 -0.7
929,726 - AMB_RS04430 0.38 -1.2
929,726 - AMB_RS04430 0.38 -1.6
929,726 - AMB_RS04430 0.38 -0.2
929,881 + AMB_RS04430 0.73 -0.7
929,881 + AMB_RS04430 0.73 +0.5
929,881 + AMB_RS04430 0.73 -0.4
929,882 - AMB_RS04430 0.73 +0.6
929,894 - AMB_RS04430 0.75 +0.0
929,956 + AMB_RS04430 0.89 +0.1
929,956 + AMB_RS04430 0.89 -0.5
929,956 + AMB_RS04430 0.89 +0.0
929,956 + AMB_RS04430 0.89 -0.1
929,956 + AMB_RS04430 0.89 -0.2
929,956 + AMB_RS04430 0.89 -1.6
929,957 - AMB_RS04430 0.90 +1.4
929,957 - AMB_RS04430 0.90 +0.2
929,957 - AMB_RS04430 0.90 -0.1
929,957 - AMB_RS04430 0.90 +0.6
929,957 - AMB_RS04430 0.90 +0.3
929,957 - AMB_RS04430 0.90 -0.6
929,957 - AMB_RS04430 0.90 -0.7
929,957 - AMB_RS04430 0.90 -0.0
929,957 - AMB_RS04430 0.90 +0.4
929,957 - AMB_RS04430 0.90 +1.1
929,957 - AMB_RS04430 0.90 +1.1
929,957 - AMB_RS04430 0.90 +0.2
929,957 - AMB_RS04430 0.90 -0.2
930,006 + -1.0
930,007 - -1.1
930,007 - -0.4
930,117 + +0.4
930,137 + -0.0
930,138 - -1.5
930,138 - -0.2
930,320 + -0.5
930,321 - -0.2
930,507 + AMB_RS04435 0.18 -0.8
930,508 - AMB_RS04435 0.18 -1.4
930,508 - AMB_RS04435 0.18 +0.6
930,568 - AMB_RS04435 0.22 +0.5
930,643 + AMB_RS04435 0.27 -2.9
930,644 - AMB_RS04435 0.27 -1.0
930,644 - AMB_RS04435 0.27 -0.9
930,777 + AMB_RS04435 0.36 +0.4
930,778 - AMB_RS04435 0.36 -0.7
930,778 - AMB_RS04435 0.36 -1.2
930,822 + AMB_RS04435 0.39 -0.6
930,822 + AMB_RS04435 0.39 -0.4
930,822 + AMB_RS04435 0.39 +0.4
930,823 - AMB_RS04435 0.39 +1.4
930,823 - AMB_RS04435 0.39 +0.6
930,823 - AMB_RS04435 0.39 -1.4
930,823 - AMB_RS04435 0.39 -0.2
930,823 - AMB_RS04435 0.39 +0.3
930,823 - AMB_RS04435 0.39 +0.7
930,823 - AMB_RS04435 0.39 -2.1
930,823 - AMB_RS04435 0.39 -1.6
930,823 - AMB_RS04435 0.39 +0.8
930,823 - AMB_RS04435 0.39 +0.0
930,823 - AMB_RS04435 0.39 -0.1
930,824 + AMB_RS04435 0.39 -0.6
930,825 - AMB_RS04435 0.39 +0.0
930,825 - AMB_RS04435 0.39 -0.1
931,113 + AMB_RS04435 0.58 -1.2
931,113 + AMB_RS04435 0.58 +0.6
931,113 + AMB_RS04435 0.58 +0.5
931,121 + AMB_RS04435 0.59 -0.1
931,121 + AMB_RS04435 0.59 +0.4
931,278 + AMB_RS04435 0.69 +0.3
931,278 + AMB_RS04435 0.69 -0.0
931,278 + AMB_RS04435 0.69 -1.2
931,279 - AMB_RS04435 0.69 -0.5
931,279 - AMB_RS04435 0.69 -1.6
931,279 - AMB_RS04435 0.69 -1.6
931,303 + AMB_RS04435 0.71 -0.6
931,303 + AMB_RS04435 0.71 -0.7
931,303 + AMB_RS04435 0.71 +1.3
931,303 + AMB_RS04435 0.71 -2.4
931,304 - AMB_RS04435 0.71 +0.1
931,304 - AMB_RS04435 0.71 +0.4
931,392 + AMB_RS04435 0.77 -0.4
931,392 + AMB_RS04435 0.77 -0.1
931,392 + AMB_RS04435 0.77 +1.4
931,393 - AMB_RS04435 0.77 -0.7
931,393 - AMB_RS04435 0.77 -0.2
931,393 - AMB_RS04435 0.77 -1.1
931,393 - AMB_RS04435 0.77 -0.2
931,455 + AMB_RS04435 0.81 -1.9
931,455 + AMB_RS04435 0.81 -1.0
931,456 - AMB_RS04435 0.81 -0.3
931,456 - AMB_RS04435 0.81 +0.3
931,479 + AMB_RS04435 0.82 -1.2
931,479 + AMB_RS04435 0.82 +0.5
931,479 + AMB_RS04435 0.82 +0.4
931,480 - AMB_RS04435 0.82 -0.4
931,480 - AMB_RS04435 0.82 -0.2
931,480 - AMB_RS04435 0.82 +0.2
931,611 + +0.1
931,611 + +0.3
931,612 - -0.3
931,623 + -1.9
931,823 + -1.2
931,823 + -0.8
931,824 - -0.1
931,824 - -0.1
931,864 + -0.6
931,889 + -0.2
931,889 + -0.4
931,890 - +0.2
931,890 - +0.1
931,890 - +0.6
931,890 - +0.4
931,890 - -0.1
931,920 + +0.4
931,986 + AMB_RS04440 0.33 +1.4
932,112 + +0.1
932,158 + -1.2
932,159 - -0.5
932,668 + -0.2
932,668 + -0.4
932,669 - -0.3
932,669 - -0.3
932,670 + -1.1
932,670 + -1.4
932,670 + -0.5
932,670 + -0.5
932,670 + +0.1
932,671 - +0.6
932,671 - +1.7
932,671 - +0.8
932,671 - -0.4
932,728 + +0.3
932,729 - -1.9
932,729 - +0.4

Or see this region's nucleotide sequence