Experiment: 150_initial_2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS02935 and AMB_RS02940 are separated by 30 nucleotides AMB_RS02940 and AMB_RS02945 are separated by 8 nucleotides AMB_RS02945 and AMB_RS02950 overlap by 1 nucleotides
AMB_RS02935: AMB_RS02935 - PAS domain-containing sensor histidine kinase, at 613,978 to 616,245
_RS02935
AMB_RS02940: AMB_RS02940 - VWA domain-containing protein, at 616,276 to 617,484
_RS02940
AMB_RS02945: AMB_RS02945 - hemerythrin, at 617,493 to 617,882
_RS02945
AMB_RS02950: AMB_RS02950 - MoxR family ATPase, at 617,882 to 618,727
_RS02950
Position (kb) 616
617
618 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 615.278 kb on + strand, within AMB_RS02935 at 615.278 kb on + strand, within AMB_RS02935 at 615.279 kb on - strand, within AMB_RS02935 at 615.701 kb on + strand, within AMB_RS02935 at 615.743 kb on + strand, within AMB_RS02935 at 615.743 kb on + strand, within AMB_RS02935 at 615.743 kb on + strand, within AMB_RS02935 at 615.743 kb on + strand, within AMB_RS02935 at 615.744 kb on - strand, within AMB_RS02935 at 615.744 kb on - strand, within AMB_RS02935 at 615.744 kb on - strand, within AMB_RS02935 at 615.744 kb on - strand, within AMB_RS02935 at 615.744 kb on - strand, within AMB_RS02935 at 615.744 kb on - strand, within AMB_RS02935 at 615.814 kb on - strand, within AMB_RS02935 at 615.814 kb on - strand, within AMB_RS02935 at 615.875 kb on + strand, within AMB_RS02935 at 615.876 kb on - strand, within AMB_RS02935 at 616.222 kb on + strand at 616.223 kb on - strand at 616.223 kb on - strand at 616.263 kb on + strand at 616.263 kb on + strand at 616.264 kb on - strand at 616.565 kb on + strand, within AMB_RS02940 at 616.565 kb on + strand, within AMB_RS02940 at 616.565 kb on + strand, within AMB_RS02940 at 616.565 kb on + strand, within AMB_RS02940 at 616.566 kb on - strand, within AMB_RS02940 at 616.581 kb on + strand, within AMB_RS02940 at 616.581 kb on + strand, within AMB_RS02940 at 616.581 kb on + strand, within AMB_RS02940 at 616.581 kb on + strand, within AMB_RS02940 at 616.582 kb on - strand, within AMB_RS02940 at 616.582 kb on - strand, within AMB_RS02940 at 616.582 kb on - strand, within AMB_RS02940 at 616.649 kb on + strand, within AMB_RS02940 at 616.667 kb on + strand, within AMB_RS02940 at 616.667 kb on + strand, within AMB_RS02940 at 616.667 kb on + strand, within AMB_RS02940 at 616.668 kb on - strand, within AMB_RS02940 at 616.668 kb on - strand, within AMB_RS02940 at 616.699 kb on + strand, within AMB_RS02940 at 617.037 kb on + strand, within AMB_RS02940 at 617.039 kb on + strand, within AMB_RS02940 at 617.039 kb on + strand, within AMB_RS02940 at 617.039 kb on + strand, within AMB_RS02940 at 617.039 kb on + strand, within AMB_RS02940 at 617.040 kb on - strand, within AMB_RS02940 at 617.045 kb on + strand, within AMB_RS02940 at 617.046 kb on - strand, within AMB_RS02940 at 617.046 kb on - strand, within AMB_RS02940 at 617.338 kb on + strand, within AMB_RS02940 at 617.360 kb on + strand, within AMB_RS02940 at 617.360 kb on + strand, within AMB_RS02940 at 617.360 kb on + strand, within AMB_RS02940 at 617.361 kb on - strand, within AMB_RS02940 at 617.361 kb on - strand, within AMB_RS02940 at 617.363 kb on + strand, within AMB_RS02940 at 617.363 kb on + strand, within AMB_RS02940 at 617.363 kb on + strand, within AMB_RS02940 at 617.363 kb on + strand, within AMB_RS02940 at 617.363 kb on + strand, within AMB_RS02940 at 617.363 kb on + strand, within AMB_RS02940 at 617.363 kb on + strand, within AMB_RS02940 at 617.364 kb on - strand at 617.364 kb on - strand at 617.364 kb on - strand at 617.364 kb on - strand at 617.364 kb on - strand at 617.364 kb on - strand at 617.364 kb on - strand at 617.364 kb on - strand at 617.364 kb on - strand at 617.364 kb on - strand at 617.423 kb on + strand at 617.424 kb on - strand at 617.424 kb on - strand at 617.589 kb on - strand, within AMB_RS02945 at 617.617 kb on + strand, within AMB_RS02945 at 617.740 kb on + strand, within AMB_RS02945 at 617.740 kb on + strand, within AMB_RS02945 at 617.741 kb on - strand, within AMB_RS02945 at 617.741 kb on - strand, within AMB_RS02945 at 618.108 kb on - strand, within AMB_RS02950 at 618.150 kb on + strand, within AMB_RS02950 at 618.150 kb on + strand, within AMB_RS02950 at 618.201 kb on + strand, within AMB_RS02950 at 618.201 kb on + strand, within AMB_RS02950 at 618.201 kb on + strand, within AMB_RS02950 at 618.201 kb on + strand, within AMB_RS02950 at 618.201 kb on + strand, within AMB_RS02950 at 618.202 kb on - strand, within AMB_RS02950 at 618.202 kb on - strand, within AMB_RS02950 at 618.202 kb on - strand, within AMB_RS02950 at 618.309 kb on + strand, within AMB_RS02950 at 618.310 kb on - strand, within AMB_RS02950 at 618.447 kb on + strand, within AMB_RS02950 at 618.447 kb on + strand, within AMB_RS02950 at 618.447 kb on + strand, within AMB_RS02950 at 618.447 kb on + strand, within AMB_RS02950 at 618.448 kb on - strand, within AMB_RS02950 at 618.448 kb on - strand, within AMB_RS02950 at 618.448 kb on - strand, within AMB_RS02950 at 618.448 kb on - strand, within AMB_RS02950 at 618.448 kb on - strand, within AMB_RS02950 at 618.448 kb on - strand, within AMB_RS02950
Per-strain Table
Position Strand Gene LocusTag Fraction 150_initial_2 remove 615,278 + AMB_RS02935 0.57 -0.7 615,278 + AMB_RS02935 0.57 -0.3 615,279 - AMB_RS02935 0.57 +0.5 615,701 + AMB_RS02935 0.76 -0.8 615,743 + AMB_RS02935 0.78 +1.3 615,743 + AMB_RS02935 0.78 -0.0 615,743 + AMB_RS02935 0.78 +0.9 615,743 + AMB_RS02935 0.78 +0.0 615,744 - AMB_RS02935 0.78 +0.5 615,744 - AMB_RS02935 0.78 -0.1 615,744 - AMB_RS02935 0.78 -0.3 615,744 - AMB_RS02935 0.78 -1.6 615,744 - AMB_RS02935 0.78 +0.1 615,744 - AMB_RS02935 0.78 -0.0 615,814 - AMB_RS02935 0.81 -1.1 615,814 - AMB_RS02935 0.81 -1.0 615,875 + AMB_RS02935 0.84 -0.7 615,876 - AMB_RS02935 0.84 -1.5 616,222 + +1.8 616,223 - -0.4 616,223 - +0.1 616,263 + +0.0 616,263 + +0.4 616,264 - -1.7 616,565 + AMB_RS02940 0.24 -0.5 616,565 + AMB_RS02940 0.24 -1.1 616,565 + AMB_RS02940 0.24 -0.3 616,565 + AMB_RS02940 0.24 +0.4 616,566 - AMB_RS02940 0.24 -0.1 616,581 + AMB_RS02940 0.25 -0.4 616,581 + AMB_RS02940 0.25 -0.3 616,581 + AMB_RS02940 0.25 -0.3 616,581 + AMB_RS02940 0.25 -0.6 616,582 - AMB_RS02940 0.25 -1.7 616,582 - AMB_RS02940 0.25 -1.6 616,582 - AMB_RS02940 0.25 -0.0 616,649 + AMB_RS02940 0.31 -0.5 616,667 + AMB_RS02940 0.32 -1.0 616,667 + AMB_RS02940 0.32 +0.6 616,667 + AMB_RS02940 0.32 -1.9 616,668 - AMB_RS02940 0.32 +0.4 616,668 - AMB_RS02940 0.32 -0.3 616,699 + AMB_RS02940 0.35 -3.1 617,037 + AMB_RS02940 0.63 -0.5 617,039 + AMB_RS02940 0.63 -0.5 617,039 + AMB_RS02940 0.63 -0.8 617,039 + AMB_RS02940 0.63 -0.7 617,039 + AMB_RS02940 0.63 +0.2 617,040 - AMB_RS02940 0.63 +0.6 617,045 + AMB_RS02940 0.64 -0.4 617,046 - AMB_RS02940 0.64 -1.6 617,046 - AMB_RS02940 0.64 -0.4 617,338 + AMB_RS02940 0.88 -0.2 617,360 + AMB_RS02940 0.90 -0.6 617,360 + AMB_RS02940 0.90 -0.0 617,360 + AMB_RS02940 0.90 -1.5 617,361 - AMB_RS02940 0.90 +1.7 617,361 - AMB_RS02940 0.90 +0.1 617,363 + AMB_RS02940 0.90 +2.2 617,363 + AMB_RS02940 0.90 -3.5 617,363 + AMB_RS02940 0.90 -0.3 617,363 + AMB_RS02940 0.90 -0.0 617,363 + AMB_RS02940 0.90 -0.1 617,363 + AMB_RS02940 0.90 -0.4 617,363 + AMB_RS02940 0.90 +0.4 617,364 - -0.4 617,364 - -0.4 617,364 - -0.1 617,364 - -0.3 617,364 - -0.8 617,364 - -0.7 617,364 - +0.1 617,364 - +1.2 617,364 - -0.3 617,364 - -0.2 617,423 + +1.1 617,424 - -0.2 617,424 - +0.8 617,589 - AMB_RS02945 0.25 -0.7 617,617 + AMB_RS02945 0.32 -0.1 617,740 + AMB_RS02945 0.63 +0.3 617,740 + AMB_RS02945 0.63 -0.4 617,741 - AMB_RS02945 0.64 -1.3 617,741 - AMB_RS02945 0.64 -1.9 618,108 - AMB_RS02950 0.27 -0.6 618,150 + AMB_RS02950 0.32 +0.1 618,150 + AMB_RS02950 0.32 -0.0 618,201 + AMB_RS02950 0.38 -0.6 618,201 + AMB_RS02950 0.38 +0.2 618,201 + AMB_RS02950 0.38 -0.0 618,201 + AMB_RS02950 0.38 -0.1 618,201 + AMB_RS02950 0.38 -0.7 618,202 - AMB_RS02950 0.38 -0.6 618,202 - AMB_RS02950 0.38 -1.0 618,202 - AMB_RS02950 0.38 +0.1 618,309 + AMB_RS02950 0.50 -0.7 618,310 - AMB_RS02950 0.51 -0.6 618,447 + AMB_RS02950 0.67 +1.6 618,447 + AMB_RS02950 0.67 -0.2 618,447 + AMB_RS02950 0.67 +0.1 618,447 + AMB_RS02950 0.67 -0.3 618,448 - AMB_RS02950 0.67 -0.1 618,448 - AMB_RS02950 0.67 +0.5 618,448 - AMB_RS02950 0.67 -0.7 618,448 - AMB_RS02950 0.67 -0.0 618,448 - AMB_RS02950 0.67 -0.7 618,448 - AMB_RS02950 0.67 +0.8
Or see this region's nucleotide sequence