Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS02685

Experiment: 150_initial_2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS02675 and AMB_RS02680 are separated by 66 nucleotidesAMB_RS02680 and AMB_RS02685 are separated by 132 nucleotidesAMB_RS02685 and AMB_RS02690 are separated by 11 nucleotides AMB_RS02675: AMB_RS02675 - YcgN family cysteine cluster protein, at 556,939 to 557,421 _RS02675 AMB_RS02680: AMB_RS02680 - hypothetical protein, at 557,488 to 557,856 _RS02680 AMB_RS02685: AMB_RS02685 - glutamate synthase large subunit, at 557,989 to 562,503 _RS02685 AMB_RS02690: AMB_RS02690 - dihydropyrimidine dehydrogenase subunit A, at 562,515 to 563,930 _RS02690 Position (kb) 557 558 559 560 561 562 563Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 557.116 kb on + strand, within AMB_RS02675at 557.170 kb on + strand, within AMB_RS02675at 557.171 kb on - strand, within AMB_RS02675at 557.171 kb on - strand, within AMB_RS02675at 557.171 kb on - strand, within AMB_RS02675at 557.171 kb on - strand, within AMB_RS02675at 557.395 kb on + strandat 557.395 kb on + strandat 557.395 kb on + strandat 557.395 kb on + strandat 557.395 kb on + strandat 557.395 kb on + strandat 557.395 kb on + strandat 557.396 kb on - strandat 557.396 kb on - strandat 557.396 kb on - strandat 557.396 kb on - strandat 557.396 kb on - strandat 557.459 kb on + strandat 557.459 kb on + strandat 557.459 kb on + strandat 557.459 kb on + strandat 557.466 kb on - strandat 557.466 kb on - strandat 557.825 kb on + strandat 557.880 kb on + strandat 557.978 kb on + strandat 557.978 kb on + strandat 557.979 kb on - strandat 557.979 kb on - strandat 558.058 kb on + strandat 558.059 kb on - strandat 558.059 kb on - strandat 558.059 kb on - strandat 558.077 kb on - strandat 558.246 kb on - strandat 558.329 kb on + strandat 558.329 kb on + strandat 558.329 kb on + strandat 558.329 kb on + strandat 558.330 kb on - strandat 558.330 kb on - strandat 558.330 kb on - strandat 558.330 kb on - strandat 558.330 kb on - strandat 558.330 kb on - strandat 558.444 kb on - strand, within AMB_RS02685at 558.545 kb on + strand, within AMB_RS02685at 558.545 kb on + strand, within AMB_RS02685at 558.545 kb on + strand, within AMB_RS02685at 558.546 kb on - strand, within AMB_RS02685at 558.546 kb on - strand, within AMB_RS02685at 558.546 kb on - strand, within AMB_RS02685at 558.546 kb on - strand, within AMB_RS02685at 558.731 kb on + strand, within AMB_RS02685at 558.732 kb on - strand, within AMB_RS02685at 558.732 kb on - strand, within AMB_RS02685at 558.836 kb on + strand, within AMB_RS02685at 558.837 kb on - strand, within AMB_RS02685at 558.886 kb on + strand, within AMB_RS02685at 558.886 kb on + strand, within AMB_RS02685at 558.886 kb on + strand, within AMB_RS02685at 558.886 kb on + strand, within AMB_RS02685at 558.887 kb on - strand, within AMB_RS02685at 558.887 kb on - strand, within AMB_RS02685at 558.887 kb on - strand, within AMB_RS02685at 558.887 kb on - strand, within AMB_RS02685at 558.887 kb on - strand, within AMB_RS02685at 559.412 kb on - strand, within AMB_RS02685at 559.475 kb on + strand, within AMB_RS02685at 559.475 kb on + strand, within AMB_RS02685at 559.476 kb on - strand, within AMB_RS02685at 559.476 kb on - strand, within AMB_RS02685at 559.505 kb on + strand, within AMB_RS02685at 559.505 kb on + strand, within AMB_RS02685at 559.505 kb on + strand, within AMB_RS02685at 559.505 kb on + strand, within AMB_RS02685at 559.505 kb on + strand, within AMB_RS02685at 559.505 kb on + strand, within AMB_RS02685at 559.506 kb on - strand, within AMB_RS02685at 559.506 kb on - strand, within AMB_RS02685at 559.506 kb on - strand, within AMB_RS02685at 560.000 kb on + strand, within AMB_RS02685at 560.001 kb on - strand, within AMB_RS02685at 560.001 kb on - strand, within AMB_RS02685at 560.009 kb on + strand, within AMB_RS02685at 560.009 kb on + strand, within AMB_RS02685at 560.009 kb on + strand, within AMB_RS02685at 560.009 kb on + strand, within AMB_RS02685at 560.233 kb on - strand, within AMB_RS02685at 560.261 kb on + strand, within AMB_RS02685at 560.262 kb on - strand, within AMB_RS02685at 560.274 kb on - strand, within AMB_RS02685at 560.292 kb on + strand, within AMB_RS02685at 560.292 kb on + strand, within AMB_RS02685at 560.336 kb on + strand, within AMB_RS02685at 560.336 kb on + strand, within AMB_RS02685at 560.337 kb on - strand, within AMB_RS02685at 560.337 kb on - strand, within AMB_RS02685at 560.337 kb on - strand, within AMB_RS02685at 560.337 kb on - strand, within AMB_RS02685at 560.342 kb on + strand, within AMB_RS02685at 560.343 kb on - strand, within AMB_RS02685at 560.423 kb on + strand, within AMB_RS02685at 560.424 kb on - strand, within AMB_RS02685at 560.424 kb on - strand, within AMB_RS02685at 560.468 kb on + strand, within AMB_RS02685at 560.468 kb on + strand, within AMB_RS02685at 560.469 kb on - strand, within AMB_RS02685at 560.469 kb on - strand, within AMB_RS02685at 560.745 kb on + strand, within AMB_RS02685at 560.747 kb on + strand, within AMB_RS02685at 560.747 kb on + strand, within AMB_RS02685at 560.747 kb on + strand, within AMB_RS02685at 560.747 kb on + strand, within AMB_RS02685at 560.747 kb on + strand, within AMB_RS02685at 560.747 kb on + strand, within AMB_RS02685at 560.747 kb on + strand, within AMB_RS02685at 560.747 kb on + strand, within AMB_RS02685at 560.747 kb on + strand, within AMB_RS02685at 560.748 kb on - strand, within AMB_RS02685at 560.748 kb on - strand, within AMB_RS02685at 560.748 kb on - strand, within AMB_RS02685at 560.748 kb on - strand, within AMB_RS02685at 560.748 kb on - strand, within AMB_RS02685at 560.748 kb on - strand, within AMB_RS02685at 560.748 kb on - strand, within AMB_RS02685at 560.748 kb on - strand, within AMB_RS02685at 560.748 kb on - strand, within AMB_RS02685at 560.748 kb on - strand, within AMB_RS02685at 560.748 kb on - strand, within AMB_RS02685at 561.176 kb on + strand, within AMB_RS02685at 561.177 kb on - strand, within AMB_RS02685at 561.177 kb on - strand, within AMB_RS02685at 561.177 kb on - strand, within AMB_RS02685at 561.177 kb on - strand, within AMB_RS02685at 561.221 kb on + strand, within AMB_RS02685at 561.222 kb on - strand, within AMB_RS02685at 561.357 kb on + strand, within AMB_RS02685at 561.358 kb on - strand, within AMB_RS02685at 561.358 kb on - strand, within AMB_RS02685at 561.358 kb on - strand, within AMB_RS02685at 561.358 kb on - strand, within AMB_RS02685at 561.792 kb on - strand, within AMB_RS02685at 561.792 kb on - strand, within AMB_RS02685at 561.792 kb on - strand, within AMB_RS02685at 561.803 kb on + strand, within AMB_RS02685at 561.803 kb on + strand, within AMB_RS02685at 561.803 kb on + strand, within AMB_RS02685at 561.803 kb on + strand, within AMB_RS02685at 561.803 kb on + strand, within AMB_RS02685at 561.804 kb on - strand, within AMB_RS02685at 561.804 kb on - strand, within AMB_RS02685at 561.849 kb on - strand, within AMB_RS02685at 561.887 kb on + strand, within AMB_RS02685at 561.887 kb on + strand, within AMB_RS02685at 561.887 kb on + strand, within AMB_RS02685at 561.887 kb on + strand, within AMB_RS02685at 561.887 kb on + strand, within AMB_RS02685at 561.888 kb on - strand, within AMB_RS02685at 561.920 kb on + strand, within AMB_RS02685at 561.920 kb on + strand, within AMB_RS02685at 561.920 kb on + strand, within AMB_RS02685at 561.920 kb on + strand, within AMB_RS02685at 561.920 kb on + strand, within AMB_RS02685at 561.920 kb on + strand, within AMB_RS02685at 561.921 kb on - strand, within AMB_RS02685at 561.921 kb on - strand, within AMB_RS02685at 561.921 kb on - strand, within AMB_RS02685at 562.109 kb on + strandat 562.109 kb on + strandat 562.109 kb on + strandat 562.109 kb on + strandat 562.110 kb on - strandat 562.110 kb on - strandat 562.110 kb on - strandat 562.110 kb on - strandat 562.110 kb on - strandat 562.481 kb on + strandat 562.481 kb on + strandat 562.482 kb on - strandat 562.516 kb on + strandat 562.517 kb on - strandat 562.517 kb on - strandat 562.550 kb on - strandat 563.140 kb on + strand, within AMB_RS02690at 563.141 kb on - strand, within AMB_RS02690at 563.203 kb on + strand, within AMB_RS02690at 563.203 kb on + strand, within AMB_RS02690at 563.203 kb on + strand, within AMB_RS02690at 563.203 kb on + strand, within AMB_RS02690at 563.203 kb on + strand, within AMB_RS02690at 563.204 kb on - strand, within AMB_RS02690at 563.204 kb on - strand, within AMB_RS02690at 563.368 kb on + strand, within AMB_RS02690at 563.369 kb on - strand, within AMB_RS02690at 563.369 kb on - strand, within AMB_RS02690

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Per-strain Table

Position Strand Gene LocusTag Fraction 150_initial_2
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557,116 + AMB_RS02675 0.37 +1.4
557,170 + AMB_RS02675 0.48 +0.1
557,171 - AMB_RS02675 0.48 -0.6
557,171 - AMB_RS02675 0.48 +0.4
557,171 - AMB_RS02675 0.48 -0.1
557,171 - AMB_RS02675 0.48 -0.4
557,395 + +0.7
557,395 + +0.4
557,395 + +0.4
557,395 + -0.4
557,395 + -1.0
557,395 + +0.3
557,395 + -0.2
557,396 - -0.3
557,396 - +0.3
557,396 - -0.8
557,396 - -0.5
557,396 - -1.2
557,459 + -0.5
557,459 + +0.4
557,459 + -0.1
557,459 + +0.8
557,466 - +0.4
557,466 - +0.6
557,825 + -0.8
557,880 + -0.3
557,978 + -1.9
557,978 + -0.4
557,979 - -1.2
557,979 - -0.1
558,058 + +0.7
558,059 - -2.2
558,059 - -0.6
558,059 - -0.9
558,077 - -2.8
558,246 - -0.6
558,329 + +0.4
558,329 + +2.0
558,329 + -1.0
558,329 + -1.0
558,330 - +1.0
558,330 - -0.6
558,330 - -1.6
558,330 - -0.7
558,330 - +0.1
558,330 - -0.2
558,444 - AMB_RS02685 0.10 +0.4
558,545 + AMB_RS02685 0.12 -1.0
558,545 + AMB_RS02685 0.12 -2.4
558,545 + AMB_RS02685 0.12 -1.0
558,546 - AMB_RS02685 0.12 -0.0
558,546 - AMB_RS02685 0.12 -0.0
558,546 - AMB_RS02685 0.12 -1.1
558,546 - AMB_RS02685 0.12 -0.4
558,731 + AMB_RS02685 0.16 -0.2
558,732 - AMB_RS02685 0.16 -0.9
558,732 - AMB_RS02685 0.16 -2.2
558,836 + AMB_RS02685 0.19 -1.5
558,837 - AMB_RS02685 0.19 +1.2
558,886 + AMB_RS02685 0.20 +0.1
558,886 + AMB_RS02685 0.20 -0.3
558,886 + AMB_RS02685 0.20 -0.8
558,886 + AMB_RS02685 0.20 +0.2
558,887 - AMB_RS02685 0.20 -1.9
558,887 - AMB_RS02685 0.20 -1.4
558,887 - AMB_RS02685 0.20 -0.3
558,887 - AMB_RS02685 0.20 -1.9
558,887 - AMB_RS02685 0.20 -0.8
559,412 - AMB_RS02685 0.32 +1.6
559,475 + AMB_RS02685 0.33 +0.1
559,475 + AMB_RS02685 0.33 +0.5
559,476 - AMB_RS02685 0.33 -1.2
559,476 - AMB_RS02685 0.33 -2.0
559,505 + AMB_RS02685 0.34 -2.4
559,505 + AMB_RS02685 0.34 -0.2
559,505 + AMB_RS02685 0.34 +0.2
559,505 + AMB_RS02685 0.34 -0.8
559,505 + AMB_RS02685 0.34 -0.7
559,505 + AMB_RS02685 0.34 -1.9
559,506 - AMB_RS02685 0.34 -0.7
559,506 - AMB_RS02685 0.34 +0.9
559,506 - AMB_RS02685 0.34 -0.7
560,000 + AMB_RS02685 0.45 +0.7
560,001 - AMB_RS02685 0.45 -0.6
560,001 - AMB_RS02685 0.45 -2.9
560,009 + AMB_RS02685 0.45 -0.4
560,009 + AMB_RS02685 0.45 -0.9
560,009 + AMB_RS02685 0.45 +0.4
560,009 + AMB_RS02685 0.45 -0.3
560,233 - AMB_RS02685 0.50 -2.9
560,261 + AMB_RS02685 0.50 +0.1
560,262 - AMB_RS02685 0.50 -0.6
560,274 - AMB_RS02685 0.51 -0.7
560,292 + AMB_RS02685 0.51 +0.4
560,292 + AMB_RS02685 0.51 -0.1
560,336 + AMB_RS02685 0.52 +0.4
560,336 + AMB_RS02685 0.52 -0.6
560,337 - AMB_RS02685 0.52 -2.6
560,337 - AMB_RS02685 0.52 +0.9
560,337 - AMB_RS02685 0.52 -0.6
560,337 - AMB_RS02685 0.52 -1.6
560,342 + AMB_RS02685 0.52 +0.7
560,343 - AMB_RS02685 0.52 +0.2
560,423 + AMB_RS02685 0.54 -0.8
560,424 - AMB_RS02685 0.54 -1.0
560,424 - AMB_RS02685 0.54 +0.2
560,468 + AMB_RS02685 0.55 -2.4
560,468 + AMB_RS02685 0.55 +0.4
560,469 - AMB_RS02685 0.55 -0.4
560,469 - AMB_RS02685 0.55 -0.2
560,745 + AMB_RS02685 0.61 -1.0
560,747 + AMB_RS02685 0.61 -0.8
560,747 + AMB_RS02685 0.61 -2.5
560,747 + AMB_RS02685 0.61 -0.3
560,747 + AMB_RS02685 0.61 -0.6
560,747 + AMB_RS02685 0.61 -0.1
560,747 + AMB_RS02685 0.61 -2.4
560,747 + AMB_RS02685 0.61 -1.6
560,747 + AMB_RS02685 0.61 +0.4
560,747 + AMB_RS02685 0.61 +0.8
560,748 - AMB_RS02685 0.61 -1.5
560,748 - AMB_RS02685 0.61 -0.3
560,748 - AMB_RS02685 0.61 -0.2
560,748 - AMB_RS02685 0.61 -0.9
560,748 - AMB_RS02685 0.61 -1.9
560,748 - AMB_RS02685 0.61 +0.2
560,748 - AMB_RS02685 0.61 -0.7
560,748 - AMB_RS02685 0.61 -0.4
560,748 - AMB_RS02685 0.61 -2.6
560,748 - AMB_RS02685 0.61 +0.1
560,748 - AMB_RS02685 0.61 -1.2
561,176 + AMB_RS02685 0.71 -0.9
561,177 - AMB_RS02685 0.71 -1.4
561,177 - AMB_RS02685 0.71 +0.0
561,177 - AMB_RS02685 0.71 -0.3
561,177 - AMB_RS02685 0.71 -1.0
561,221 + AMB_RS02685 0.72 +0.4
561,222 - AMB_RS02685 0.72 -0.7
561,357 + AMB_RS02685 0.75 -0.2
561,358 - AMB_RS02685 0.75 -0.6
561,358 - AMB_RS02685 0.75 -2.1
561,358 - AMB_RS02685 0.75 -0.8
561,358 - AMB_RS02685 0.75 +0.0
561,792 - AMB_RS02685 0.84 +0.2
561,792 - AMB_RS02685 0.84 +0.4
561,792 - AMB_RS02685 0.84 -2.8
561,803 + AMB_RS02685 0.84 -1.5
561,803 + AMB_RS02685 0.84 -0.4
561,803 + AMB_RS02685 0.84 -0.8
561,803 + AMB_RS02685 0.84 -0.3
561,803 + AMB_RS02685 0.84 -1.2
561,804 - AMB_RS02685 0.84 -0.2
561,804 - AMB_RS02685 0.84 -0.6
561,849 - AMB_RS02685 0.85 -0.7
561,887 + AMB_RS02685 0.86 -2.6
561,887 + AMB_RS02685 0.86 +0.6
561,887 + AMB_RS02685 0.86 -0.6
561,887 + AMB_RS02685 0.86 +0.3
561,887 + AMB_RS02685 0.86 -0.8
561,888 - AMB_RS02685 0.86 -1.1
561,920 + AMB_RS02685 0.87 -0.6
561,920 + AMB_RS02685 0.87 -0.9
561,920 + AMB_RS02685 0.87 -0.4
561,920 + AMB_RS02685 0.87 -1.4
561,920 + AMB_RS02685 0.87 +3.0
561,920 + AMB_RS02685 0.87 +0.3
561,921 - AMB_RS02685 0.87 -0.6
561,921 - AMB_RS02685 0.87 -0.5
561,921 - AMB_RS02685 0.87 +1.4
562,109 + -0.8
562,109 + +0.4
562,109 + +0.4
562,109 + -0.7
562,110 - +0.2
562,110 - -1.6
562,110 - -2.1
562,110 - -0.5
562,110 - -0.7
562,481 + +1.0
562,481 + -0.3
562,482 - -0.3
562,516 + +0.2
562,517 - -0.2
562,517 - +1.0
562,550 - -1.9
563,140 + AMB_RS02690 0.44 -0.3
563,141 - AMB_RS02690 0.44 +0.2
563,203 + AMB_RS02690 0.49 +0.4
563,203 + AMB_RS02690 0.49 -0.2
563,203 + AMB_RS02690 0.49 -0.8
563,203 + AMB_RS02690 0.49 -0.6
563,203 + AMB_RS02690 0.49 -0.1
563,204 - AMB_RS02690 0.49 -1.9
563,204 - AMB_RS02690 0.49 -1.8
563,368 + AMB_RS02690 0.60 -1.0
563,369 - AMB_RS02690 0.60 +0.7
563,369 - AMB_RS02690 0.60 -0.6

Or see this region's nucleotide sequence