Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS02670

Experiment: 150_initial_2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS02665 and AMB_RS02670 are separated by 142 nucleotidesAMB_RS02670 and AMB_RS02675 overlap by 38 nucleotidesAMB_RS02675 and AMB_RS02680 are separated by 66 nucleotides AMB_RS02665: AMB_RS02665 - cobyrinate a,c-diamide synthase, at 554,237 to 555,607 _RS02665 AMB_RS02670: AMB_RS02670 - polyhydroxyalkanoate depolymerase, at 555,750 to 556,976 _RS02670 AMB_RS02675: AMB_RS02675 - YcgN family cysteine cluster protein, at 556,939 to 557,421 _RS02675 AMB_RS02680: AMB_RS02680 - hypothetical protein, at 557,488 to 557,856 _RS02680 Position (kb) 555 556 557Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 555.749 kb on + strandat 555.750 kb on - strandat 555.750 kb on - strandat 555.756 kb on + strandat 555.756 kb on + strandat 555.828 kb on + strandat 555.829 kb on - strandat 555.829 kb on - strandat 555.855 kb on + strandat 555.855 kb on + strandat 555.855 kb on + strandat 555.855 kb on + strandat 555.856 kb on - strandat 555.856 kb on - strandat 555.856 kb on - strandat 555.857 kb on + strandat 555.947 kb on + strand, within AMB_RS02670at 555.947 kb on + strand, within AMB_RS02670at 555.948 kb on - strand, within AMB_RS02670at 555.948 kb on - strand, within AMB_RS02670at 556.143 kb on + strand, within AMB_RS02670at 556.143 kb on + strand, within AMB_RS02670at 556.143 kb on + strand, within AMB_RS02670at 556.144 kb on - strand, within AMB_RS02670at 556.144 kb on - strand, within AMB_RS02670at 556.144 kb on - strand, within AMB_RS02670at 556.144 kb on - strand, within AMB_RS02670at 556.144 kb on - strand, within AMB_RS02670at 556.209 kb on + strand, within AMB_RS02670at 556.209 kb on + strand, within AMB_RS02670at 556.209 kb on + strand, within AMB_RS02670at 556.209 kb on + strand, within AMB_RS02670at 556.209 kb on + strand, within AMB_RS02670at 556.209 kb on + strand, within AMB_RS02670at 556.467 kb on + strand, within AMB_RS02670at 556.467 kb on + strand, within AMB_RS02670at 556.467 kb on + strand, within AMB_RS02670at 556.467 kb on + strand, within AMB_RS02670at 556.468 kb on - strand, within AMB_RS02670at 556.468 kb on - strand, within AMB_RS02670at 556.468 kb on - strand, within AMB_RS02670at 556.468 kb on - strand, within AMB_RS02670at 556.468 kb on - strand, within AMB_RS02670at 556.491 kb on + strand, within AMB_RS02670at 556.492 kb on - strand, within AMB_RS02670at 556.620 kb on + strand, within AMB_RS02670at 556.621 kb on - strand, within AMB_RS02670at 556.621 kb on - strand, within AMB_RS02670at 556.621 kb on - strand, within AMB_RS02670at 556.621 kb on - strand, within AMB_RS02670at 556.629 kb on + strand, within AMB_RS02670at 556.629 kb on + strand, within AMB_RS02670at 556.629 kb on + strand, within AMB_RS02670at 556.659 kb on + strand, within AMB_RS02670at 556.659 kb on + strand, within AMB_RS02670at 556.660 kb on - strand, within AMB_RS02670at 556.662 kb on + strand, within AMB_RS02670at 556.662 kb on + strand, within AMB_RS02670at 556.662 kb on + strand, within AMB_RS02670at 556.662 kb on + strand, within AMB_RS02670at 556.662 kb on + strand, within AMB_RS02670at 556.663 kb on - strand, within AMB_RS02670at 556.841 kb on + strand, within AMB_RS02670at 556.842 kb on - strand, within AMB_RS02670at 556.842 kb on - strand, within AMB_RS02670at 556.842 kb on - strand, within AMB_RS02670at 556.893 kb on + strandat 556.894 kb on - strandat 556.932 kb on + strandat 556.933 kb on - strandat 557.116 kb on + strand, within AMB_RS02675at 557.170 kb on + strand, within AMB_RS02675at 557.171 kb on - strand, within AMB_RS02675at 557.171 kb on - strand, within AMB_RS02675at 557.171 kb on - strand, within AMB_RS02675at 557.171 kb on - strand, within AMB_RS02675at 557.395 kb on + strandat 557.395 kb on + strandat 557.395 kb on + strandat 557.395 kb on + strandat 557.395 kb on + strandat 557.395 kb on + strandat 557.395 kb on + strandat 557.396 kb on - strandat 557.396 kb on - strandat 557.396 kb on - strandat 557.396 kb on - strandat 557.396 kb on - strandat 557.459 kb on + strandat 557.459 kb on + strandat 557.459 kb on + strandat 557.459 kb on + strandat 557.466 kb on - strandat 557.466 kb on - strandat 557.825 kb on + strandat 557.880 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 150_initial_2
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555,749 + +0.4
555,750 - +0.1
555,750 - -2.4
555,756 + -1.4
555,756 + +1.2
555,828 + -0.9
555,829 - +0.6
555,829 - -0.4
555,855 + +2.4
555,855 + +2.0
555,855 + +1.0
555,855 + -1.6
555,856 - -0.2
555,856 - -0.1
555,856 - -0.3
555,857 + -0.2
555,947 + AMB_RS02670 0.16 -0.2
555,947 + AMB_RS02670 0.16 +0.1
555,948 - AMB_RS02670 0.16 +0.1
555,948 - AMB_RS02670 0.16 +0.1
556,143 + AMB_RS02670 0.32 -0.9
556,143 + AMB_RS02670 0.32 -0.0
556,143 + AMB_RS02670 0.32 +0.7
556,144 - AMB_RS02670 0.32 +0.5
556,144 - AMB_RS02670 0.32 -0.5
556,144 - AMB_RS02670 0.32 -1.0
556,144 - AMB_RS02670 0.32 +0.0
556,144 - AMB_RS02670 0.32 -1.3
556,209 + AMB_RS02670 0.37 -0.0
556,209 + AMB_RS02670 0.37 +0.4
556,209 + AMB_RS02670 0.37 -0.6
556,209 + AMB_RS02670 0.37 +0.6
556,209 + AMB_RS02670 0.37 +0.2
556,209 + AMB_RS02670 0.37 +0.0
556,467 + AMB_RS02670 0.58 -1.6
556,467 + AMB_RS02670 0.58 -1.2
556,467 + AMB_RS02670 0.58 +0.1
556,467 + AMB_RS02670 0.58 -0.8
556,468 - AMB_RS02670 0.59 -0.1
556,468 - AMB_RS02670 0.59 -0.1
556,468 - AMB_RS02670 0.59 +0.2
556,468 - AMB_RS02670 0.59 -0.1
556,468 - AMB_RS02670 0.59 +1.6
556,491 + AMB_RS02670 0.60 +0.3
556,492 - AMB_RS02670 0.60 +1.7
556,620 + AMB_RS02670 0.71 -0.4
556,621 - AMB_RS02670 0.71 +0.1
556,621 - AMB_RS02670 0.71 -0.2
556,621 - AMB_RS02670 0.71 +0.0
556,621 - AMB_RS02670 0.71 -0.3
556,629 + AMB_RS02670 0.72 +0.4
556,629 + AMB_RS02670 0.72 -3.2
556,629 + AMB_RS02670 0.72 +0.4
556,659 + AMB_RS02670 0.74 +0.6
556,659 + AMB_RS02670 0.74 +0.3
556,660 - AMB_RS02670 0.74 -3.0
556,662 + AMB_RS02670 0.74 -0.4
556,662 + AMB_RS02670 0.74 -0.6
556,662 + AMB_RS02670 0.74 -0.7
556,662 + AMB_RS02670 0.74 -0.6
556,662 + AMB_RS02670 0.74 -0.5
556,663 - AMB_RS02670 0.74 +0.2
556,841 + AMB_RS02670 0.89 -0.2
556,842 - AMB_RS02670 0.89 -0.4
556,842 - AMB_RS02670 0.89 -0.1
556,842 - AMB_RS02670 0.89 -0.1
556,893 + +0.2
556,894 - -0.6
556,932 + -0.1
556,933 - +0.7
557,116 + AMB_RS02675 0.37 +1.4
557,170 + AMB_RS02675 0.48 +0.1
557,171 - AMB_RS02675 0.48 -0.6
557,171 - AMB_RS02675 0.48 +0.4
557,171 - AMB_RS02675 0.48 -0.1
557,171 - AMB_RS02675 0.48 -0.4
557,395 + +0.7
557,395 + +0.4
557,395 + +0.4
557,395 + -0.4
557,395 + -1.0
557,395 + +0.3
557,395 + -0.2
557,396 - -0.3
557,396 - +0.3
557,396 - -0.8
557,396 - -0.5
557,396 - -1.2
557,459 + -0.5
557,459 + +0.4
557,459 + -0.1
557,459 + +0.8
557,466 - +0.4
557,466 - +0.6
557,825 + -0.8
557,880 + -0.3

Or see this region's nucleotide sequence