Experiment: 150_initial_2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS02145 and AMB_RS02150 overlap by 4 nucleotides AMB_RS02150 and AMB_RS02155 are separated by 73 nucleotides AMB_RS02155 and AMB_RS02160 are separated by 181 nucleotides AMB_RS02160 and AMB_RS02165 are separated by 148 nucleotides
AMB_RS02145: AMB_RS02145 - hypothetical protein, at 451,732 to 453,048
_RS02145
AMB_RS02150: AMB_RS02150 - hypothetical protein, at 453,045 to 454,085
_RS02150
AMB_RS02155: AMB_RS02155 - hypothetical protein, at 454,159 to 454,458
_RS02155
AMB_RS02160: AMB_RS02160 - tRNA-Ser, at 454,640 to 454,732
_RS02160
AMB_RS02165: AMB_RS02165 - hypothetical protein, at 454,881 to 455,144
_RS02165
Position (kb) 453
454
455 Strain fitness (log2 ratio) -2
-1
0
1 at 452.108 kb on + strand, within AMB_RS02145 at 452.109 kb on - strand, within AMB_RS02145 at 452.109 kb on - strand, within AMB_RS02145 at 452.109 kb on - strand, within AMB_RS02145 at 452.474 kb on + strand, within AMB_RS02145 at 452.474 kb on + strand, within AMB_RS02145 at 452.475 kb on - strand, within AMB_RS02145 at 452.475 kb on - strand, within AMB_RS02145 at 452.637 kb on + strand, within AMB_RS02145 at 452.637 kb on + strand, within AMB_RS02145 at 452.637 kb on + strand, within AMB_RS02145 at 452.637 kb on + strand, within AMB_RS02145 at 452.725 kb on + strand, within AMB_RS02145 at 452.725 kb on + strand, within AMB_RS02145 at 452.725 kb on + strand, within AMB_RS02145 at 452.725 kb on + strand, within AMB_RS02145 at 452.725 kb on + strand, within AMB_RS02145 at 452.726 kb on - strand, within AMB_RS02145 at 452.726 kb on - strand, within AMB_RS02145 at 452.726 kb on - strand, within AMB_RS02145 at 452.726 kb on - strand, within AMB_RS02145 at 452.726 kb on - strand, within AMB_RS02145 at 452.726 kb on - strand, within AMB_RS02145 at 452.858 kb on + strand, within AMB_RS02145 at 452.859 kb on - strand, within AMB_RS02145 at 452.859 kb on - strand, within AMB_RS02145 at 453.099 kb on + strand at 453.201 kb on + strand, within AMB_RS02150 at 453.201 kb on + strand, within AMB_RS02150 at 453.561 kb on + strand, within AMB_RS02150 at 453.562 kb on - strand, within AMB_RS02150 at 453.870 kb on + strand, within AMB_RS02150 at 453.870 kb on + strand, within AMB_RS02150 at 453.870 kb on + strand, within AMB_RS02150 at 453.870 kb on + strand, within AMB_RS02150 at 453.870 kb on + strand, within AMB_RS02150 at 453.871 kb on - strand, within AMB_RS02150 at 453.871 kb on - strand, within AMB_RS02150 at 453.871 kb on - strand, within AMB_RS02150 at 453.871 kb on - strand, within AMB_RS02150 at 453.871 kb on - strand, within AMB_RS02150 at 453.888 kb on - strand, within AMB_RS02150 at 453.888 kb on - strand, within AMB_RS02150 at 453.902 kb on - strand, within AMB_RS02150 at 453.915 kb on + strand, within AMB_RS02150 at 453.916 kb on - strand, within AMB_RS02150 at 453.916 kb on - strand, within AMB_RS02150 at 454.086 kb on - strand at 454.086 kb on - strand at 454.092 kb on + strand at 454.092 kb on + strand at 454.092 kb on + strand at 454.092 kb on + strand at 454.092 kb on + strand at 454.092 kb on + strand at 454.093 kb on - strand at 454.093 kb on - strand at 454.093 kb on - strand at 454.093 kb on - strand at 454.093 kb on - strand at 454.093 kb on - strand at 454.093 kb on - strand at 454.093 kb on - strand at 454.097 kb on + strand at 454.097 kb on + strand at 454.097 kb on + strand at 454.097 kb on + strand at 454.097 kb on + strand at 454.097 kb on + strand at 454.097 kb on + strand at 454.097 kb on + strand at 454.097 kb on + strand at 454.098 kb on - strand at 454.098 kb on - strand at 454.098 kb on - strand at 454.098 kb on - strand at 454.098 kb on - strand at 454.102 kb on + strand at 454.103 kb on - strand at 454.103 kb on - strand at 454.133 kb on + strand at 454.133 kb on + strand at 454.134 kb on - strand at 454.460 kb on + strand at 454.461 kb on - strand at 454.476 kb on - strand at 454.485 kb on - strand at 454.499 kb on + strand at 454.521 kb on - strand at 454.915 kb on + strand, within AMB_RS02165 at 454.916 kb on - strand, within AMB_RS02165 at 454.916 kb on - strand, within AMB_RS02165 at 454.916 kb on - strand, within AMB_RS02165 at 454.916 kb on - strand, within AMB_RS02165 at 455.026 kb on + strand, within AMB_RS02165 at 455.026 kb on + strand, within AMB_RS02165 at 455.026 kb on + strand, within AMB_RS02165 at 455.026 kb on + strand, within AMB_RS02165 at 455.026 kb on + strand, within AMB_RS02165 at 455.027 kb on - strand, within AMB_RS02165 at 455.027 kb on - strand, within AMB_RS02165
Per-strain Table
Position Strand Gene LocusTag Fraction 150_initial_2 remove 452,108 + AMB_RS02145 0.29 -0.8 452,109 - AMB_RS02145 0.29 +0.5 452,109 - AMB_RS02145 0.29 +1.1 452,109 - AMB_RS02145 0.29 -0.3 452,474 + AMB_RS02145 0.56 +0.1 452,474 + AMB_RS02145 0.56 -0.1 452,475 - AMB_RS02145 0.56 -0.3 452,475 - AMB_RS02145 0.56 +0.4 452,637 + AMB_RS02145 0.69 -0.6 452,637 + AMB_RS02145 0.69 -0.2 452,637 + AMB_RS02145 0.69 -0.1 452,637 + AMB_RS02145 0.69 -0.2 452,725 + AMB_RS02145 0.75 -0.4 452,725 + AMB_RS02145 0.75 -0.3 452,725 + AMB_RS02145 0.75 -0.1 452,725 + AMB_RS02145 0.75 -0.5 452,725 + AMB_RS02145 0.75 -0.2 452,726 - AMB_RS02145 0.75 +0.2 452,726 - AMB_RS02145 0.75 +0.1 452,726 - AMB_RS02145 0.75 +0.3 452,726 - AMB_RS02145 0.75 -0.5 452,726 - AMB_RS02145 0.75 +1.1 452,726 - AMB_RS02145 0.75 -0.6 452,858 + AMB_RS02145 0.85 -0.9 452,859 - AMB_RS02145 0.86 +0.1 452,859 - AMB_RS02145 0.86 -0.2 453,099 + -0.1 453,201 + AMB_RS02150 0.15 -0.3 453,201 + AMB_RS02150 0.15 +1.3 453,561 + AMB_RS02150 0.50 -2.7 453,562 - AMB_RS02150 0.50 +0.2 453,870 + AMB_RS02150 0.79 -0.3 453,870 + AMB_RS02150 0.79 -0.2 453,870 + AMB_RS02150 0.79 -0.4 453,870 + AMB_RS02150 0.79 -0.2 453,870 + AMB_RS02150 0.79 +0.1 453,871 - AMB_RS02150 0.79 -1.3 453,871 - AMB_RS02150 0.79 -0.8 453,871 - AMB_RS02150 0.79 -0.8 453,871 - AMB_RS02150 0.79 +0.4 453,871 - AMB_RS02150 0.79 -0.7 453,888 - AMB_RS02150 0.81 +0.1 453,888 - AMB_RS02150 0.81 -0.6 453,902 - AMB_RS02150 0.82 -0.5 453,915 + AMB_RS02150 0.84 -0.2 453,916 - AMB_RS02150 0.84 -0.2 453,916 - AMB_RS02150 0.84 -0.1 454,086 - -1.5 454,086 - -0.7 454,092 + -2.2 454,092 + -0.3 454,092 + +0.4 454,092 + -0.7 454,092 + -0.9 454,092 + -0.2 454,093 - +0.0 454,093 - +1.7 454,093 - +0.2 454,093 - -0.7 454,093 - -1.4 454,093 - +0.9 454,093 - -0.3 454,093 - -0.8 454,097 + +0.7 454,097 + +0.3 454,097 + -0.3 454,097 + -0.2 454,097 + +0.4 454,097 + +0.1 454,097 + +0.1 454,097 + -0.5 454,097 + +0.8 454,098 - +0.1 454,098 - -0.3 454,098 - -1.3 454,098 - +0.6 454,098 - -0.3 454,102 + -0.1 454,103 - -0.2 454,103 - -0.7 454,133 + -0.0 454,133 + -0.3 454,134 - -0.1 454,460 + -0.2 454,461 - +0.0 454,476 - -0.9 454,485 - +0.2 454,499 + +0.7 454,521 - +0.5 454,915 + AMB_RS02165 0.13 +0.3 454,916 - AMB_RS02165 0.13 -0.3 454,916 - AMB_RS02165 0.13 -2.0 454,916 - AMB_RS02165 0.13 +1.3 454,916 - AMB_RS02165 0.13 -1.4 455,026 + AMB_RS02165 0.55 +0.4 455,026 + AMB_RS02165 0.55 +1.0 455,026 + AMB_RS02165 0.55 +0.6 455,026 + AMB_RS02165 0.55 -0.1 455,026 + AMB_RS02165 0.55 +0.7 455,027 - AMB_RS02165 0.55 -0.3 455,027 - AMB_RS02165 0.55 -0.1
Or see this region's nucleotide sequence