Experiment: 150_initial_2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS00095 and AMB_RS00100 are separated by 339 nucleotides AMB_RS00100 and AMB_RS00105 are separated by 169 nucleotides AMB_RS00105 and AMB_RS00110 are separated by 162 nucleotides
AMB_RS00095: AMB_RS00095 - outer membrane lipoprotein carrier protein LolA, at 17,556 to 18,212
_RS00095
AMB_RS00100: AMB_RS00100 - exodeoxyribonuclease III, at 18,552 to 19,343
_RS00100
AMB_RS00105: AMB_RS00105 - DNA-binding response regulator, at 19,513 to 20,154
_RS00105
AMB_RS00110: AMB_RS00110 - GTP cyclohydrolase II, at 20,317 to 21,429
_RS00110
Position (kb) 18
19
20 Strain fitness (log2 ratio) -2
-1
0
1
2 at 18.364 kb on + strand at 18.406 kb on + strand at 18.407 kb on - strand at 18.407 kb on - strand at 18.407 kb on - strand at 18.408 kb on + strand at 18.408 kb on + strand at 18.408 kb on + strand at 18.408 kb on + strand at 18.408 kb on + strand at 18.409 kb on - strand at 18.409 kb on - strand at 18.409 kb on - strand at 18.409 kb on - strand at 18.410 kb on + strand at 18.410 kb on + strand at 18.410 kb on + strand at 18.410 kb on + strand at 18.410 kb on + strand at 18.411 kb on - strand at 18.411 kb on - strand at 18.465 kb on + strand at 18.465 kb on + strand at 18.549 kb on + strand at 18.593 kb on + strand at 18.593 kb on + strand at 18.593 kb on + strand at 18.738 kb on + strand, within AMB_RS00100 at 18.738 kb on + strand, within AMB_RS00100 at 18.738 kb on + strand, within AMB_RS00100 at 18.739 kb on - strand, within AMB_RS00100 at 18.739 kb on - strand, within AMB_RS00100 at 18.739 kb on - strand, within AMB_RS00100 at 18.739 kb on - strand, within AMB_RS00100 at 18.864 kb on + strand, within AMB_RS00100 at 18.865 kb on - strand, within AMB_RS00100 at 19.177 kb on - strand, within AMB_RS00100 at 19.342 kb on - strand at 19.379 kb on - strand at 20.179 kb on + strand at 20.179 kb on + strand at 20.180 kb on - strand at 20.180 kb on - strand at 20.181 kb on + strand at 20.181 kb on + strand at 20.182 kb on - strand at 20.182 kb on - strand at 20.182 kb on - strand at 20.182 kb on - strand at 20.182 kb on - strand at 20.282 kb on + strand at 20.282 kb on + strand at 20.282 kb on + strand at 20.282 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 150_initial_2 remove 18,364 + +0.9 18,406 + +0.2 18,407 - -1.0 18,407 - -0.3 18,407 - +0.4 18,408 + -1.1 18,408 + -0.9 18,408 + +1.0 18,408 + -0.2 18,408 + -0.6 18,409 - -0.5 18,409 - +0.0 18,409 - -0.0 18,409 - +1.8 18,410 + -0.4 18,410 + -0.3 18,410 + +0.2 18,410 + +1.1 18,410 + +0.5 18,411 - +1.2 18,411 - -0.1 18,465 + -0.3 18,465 + -0.0 18,549 + -0.1 18,593 + -0.5 18,593 + +2.0 18,593 + -1.3 18,738 + AMB_RS00100 0.23 +1.3 18,738 + AMB_RS00100 0.23 +1.0 18,738 + AMB_RS00100 0.23 +1.3 18,739 - AMB_RS00100 0.24 +1.5 18,739 - AMB_RS00100 0.24 -0.3 18,739 - AMB_RS00100 0.24 -2.0 18,739 - AMB_RS00100 0.24 +0.5 18,864 + AMB_RS00100 0.39 -0.1 18,865 - AMB_RS00100 0.40 +0.0 19,177 - AMB_RS00100 0.79 -0.0 19,342 - +0.5 19,379 - -0.2 20,179 + -1.9 20,179 + +1.2 20,180 - -0.1 20,180 - -1.5 20,181 + +0.5 20,181 + -0.1 20,182 - -1.1 20,182 - +0.3 20,182 - +0.2 20,182 - +0.1 20,182 - -0.4 20,282 + +0.0 20,282 + -0.3 20,282 + -0.7 20,282 + -0.1
Or see this region's nucleotide sequence