Strain Fitness in Bosea sp. OAE506 around ABIE41_RS20525

Experiment: L-Rhamnose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS20520 and ABIE41_RS20525 are separated by 15 nucleotidesABIE41_RS20525 and ABIE41_RS20530 overlap by 4 nucleotides ABIE41_RS20520: ABIE41_RS20520 - extracellular solute-binding protein, at 4,218,578 to 4,219,768 _RS20520 ABIE41_RS20525: ABIE41_RS20525 - Gfo/Idh/MocA family oxidoreductase, at 4,219,784 to 4,220,809 _RS20525 ABIE41_RS20530: ABIE41_RS20530 - Gfo/Idh/MocA family oxidoreductase, at 4,220,806 to 4,221,834 _RS20530 Position (kb) 4219 4220 4221Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4218.965 kb on + strand, within ABIE41_RS20520at 4218.965 kb on + strand, within ABIE41_RS20520at 4218.965 kb on + strand, within ABIE41_RS20520at 4218.965 kb on + strand, within ABIE41_RS20520at 4218.966 kb on - strand, within ABIE41_RS20520at 4218.966 kb on - strand, within ABIE41_RS20520at 4218.966 kb on - strand, within ABIE41_RS20520at 4218.966 kb on - strand, within ABIE41_RS20520at 4218.966 kb on - strand, within ABIE41_RS20520at 4218.966 kb on - strand, within ABIE41_RS20520at 4218.966 kb on - strand, within ABIE41_RS20520at 4219.028 kb on + strand, within ABIE41_RS20520at 4219.029 kb on - strand, within ABIE41_RS20520at 4219.029 kb on - strand, within ABIE41_RS20520at 4219.029 kb on - strand, within ABIE41_RS20520at 4219.055 kb on + strand, within ABIE41_RS20520at 4219.055 kb on + strand, within ABIE41_RS20520at 4219.139 kb on + strand, within ABIE41_RS20520at 4219.140 kb on - strand, within ABIE41_RS20520at 4219.193 kb on + strand, within ABIE41_RS20520at 4219.193 kb on + strand, within ABIE41_RS20520at 4219.193 kb on + strand, within ABIE41_RS20520at 4219.194 kb on - strand, within ABIE41_RS20520at 4219.194 kb on - strand, within ABIE41_RS20520at 4219.283 kb on + strand, within ABIE41_RS20520at 4219.283 kb on + strand, within ABIE41_RS20520at 4219.283 kb on + strand, within ABIE41_RS20520at 4219.284 kb on - strand, within ABIE41_RS20520at 4219.284 kb on - strand, within ABIE41_RS20520at 4219.547 kb on + strand, within ABIE41_RS20520at 4219.548 kb on - strand, within ABIE41_RS20520at 4219.548 kb on - strand, within ABIE41_RS20520at 4219.559 kb on + strand, within ABIE41_RS20520at 4219.559 kb on + strand, within ABIE41_RS20520at 4219.627 kb on - strand, within ABIE41_RS20520at 4219.767 kb on - strandat 4219.838 kb on - strandat 4220.294 kb on + strand, within ABIE41_RS20525at 4220.294 kb on + strand, within ABIE41_RS20525at 4220.294 kb on + strand, within ABIE41_RS20525at 4220.294 kb on + strand, within ABIE41_RS20525at 4220.294 kb on + strand, within ABIE41_RS20525at 4220.295 kb on - strand, within ABIE41_RS20525at 4220.468 kb on + strand, within ABIE41_RS20525at 4220.469 kb on - strand, within ABIE41_RS20525at 4220.567 kb on + strand, within ABIE41_RS20525at 4220.567 kb on + strand, within ABIE41_RS20525at 4220.567 kb on + strand, within ABIE41_RS20525at 4220.567 kb on + strand, within ABIE41_RS20525at 4220.568 kb on - strand, within ABIE41_RS20525at 4220.568 kb on - strand, within ABIE41_RS20525at 4220.568 kb on - strand, within ABIE41_RS20525at 4220.636 kb on - strand, within ABIE41_RS20525at 4220.663 kb on + strand, within ABIE41_RS20525at 4220.663 kb on + strand, within ABIE41_RS20525at 4220.663 kb on + strand, within ABIE41_RS20525at 4220.941 kb on + strand, within ABIE41_RS20530at 4220.941 kb on + strand, within ABIE41_RS20530at 4220.942 kb on - strand, within ABIE41_RS20530at 4220.942 kb on - strand, within ABIE41_RS20530at 4221.176 kb on + strand, within ABIE41_RS20530at 4221.176 kb on + strand, within ABIE41_RS20530at 4221.176 kb on + strand, within ABIE41_RS20530at 4221.176 kb on + strand, within ABIE41_RS20530at 4221.177 kb on - strand, within ABIE41_RS20530at 4221.177 kb on - strand, within ABIE41_RS20530at 4221.177 kb on - strand, within ABIE41_RS20530at 4221.177 kb on - strand, within ABIE41_RS20530at 4221.177 kb on - strand, within ABIE41_RS20530at 4221.177 kb on - strand, within ABIE41_RS20530at 4221.289 kb on + strand, within ABIE41_RS20530at 4221.289 kb on + strand, within ABIE41_RS20530at 4221.290 kb on - strand, within ABIE41_RS20530at 4221.293 kb on - strand, within ABIE41_RS20530at 4221.293 kb on - strand, within ABIE41_RS20530at 4221.454 kb on + strand, within ABIE41_RS20530at 4221.455 kb on - strand, within ABIE41_RS20530

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Rhamnose (C)
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4,218,965 + ABIE41_RS20520 0.32 +1.6
4,218,965 + ABIE41_RS20520 0.32 +0.7
4,218,965 + ABIE41_RS20520 0.32 +0.4
4,218,965 + ABIE41_RS20520 0.32 -0.7
4,218,966 - ABIE41_RS20520 0.33 -0.2
4,218,966 - ABIE41_RS20520 0.33 +0.4
4,218,966 - ABIE41_RS20520 0.33 -0.1
4,218,966 - ABIE41_RS20520 0.33 +0.9
4,218,966 - ABIE41_RS20520 0.33 -0.5
4,218,966 - ABIE41_RS20520 0.33 +0.1
4,218,966 - ABIE41_RS20520 0.33 +0.3
4,219,028 + ABIE41_RS20520 0.38 +0.1
4,219,029 - ABIE41_RS20520 0.38 -0.0
4,219,029 - ABIE41_RS20520 0.38 -1.4
4,219,029 - ABIE41_RS20520 0.38 +0.2
4,219,055 + ABIE41_RS20520 0.40 -1.6
4,219,055 + ABIE41_RS20520 0.40 -3.0
4,219,139 + ABIE41_RS20520 0.47 -0.0
4,219,140 - ABIE41_RS20520 0.47 +0.6
4,219,193 + ABIE41_RS20520 0.52 -1.2
4,219,193 + ABIE41_RS20520 0.52 -0.0
4,219,193 + ABIE41_RS20520 0.52 -0.4
4,219,194 - ABIE41_RS20520 0.52 +0.3
4,219,194 - ABIE41_RS20520 0.52 -0.1
4,219,283 + ABIE41_RS20520 0.59 +0.3
4,219,283 + ABIE41_RS20520 0.59 +0.1
4,219,283 + ABIE41_RS20520 0.59 -0.9
4,219,284 - ABIE41_RS20520 0.59 +0.2
4,219,284 - ABIE41_RS20520 0.59 -0.9
4,219,547 + ABIE41_RS20520 0.81 -2.7
4,219,548 - ABIE41_RS20520 0.81 +0.6
4,219,548 - ABIE41_RS20520 0.81 -0.2
4,219,559 + ABIE41_RS20520 0.82 -0.8
4,219,559 + ABIE41_RS20520 0.82 -0.9
4,219,627 - ABIE41_RS20520 0.88 -0.3
4,219,767 - -1.1
4,219,838 - -0.3
4,220,294 + ABIE41_RS20525 0.50 +0.4
4,220,294 + ABIE41_RS20525 0.50 +0.0
4,220,294 + ABIE41_RS20525 0.50 -0.7
4,220,294 + ABIE41_RS20525 0.50 +1.5
4,220,294 + ABIE41_RS20525 0.50 -0.7
4,220,295 - ABIE41_RS20525 0.50 +0.4
4,220,468 + ABIE41_RS20525 0.67 -1.6
4,220,469 - ABIE41_RS20525 0.67 +2.1
4,220,567 + ABIE41_RS20525 0.76 -1.4
4,220,567 + ABIE41_RS20525 0.76 -0.2
4,220,567 + ABIE41_RS20525 0.76 +0.1
4,220,567 + ABIE41_RS20525 0.76 +0.3
4,220,568 - ABIE41_RS20525 0.76 -0.3
4,220,568 - ABIE41_RS20525 0.76 +1.4
4,220,568 - ABIE41_RS20525 0.76 +0.4
4,220,636 - ABIE41_RS20525 0.83 -0.4
4,220,663 + ABIE41_RS20525 0.86 -0.3
4,220,663 + ABIE41_RS20525 0.86 -2.8
4,220,663 + ABIE41_RS20525 0.86 -0.6
4,220,941 + ABIE41_RS20530 0.13 -0.3
4,220,941 + ABIE41_RS20530 0.13 -0.4
4,220,942 - ABIE41_RS20530 0.13 +0.1
4,220,942 - ABIE41_RS20530 0.13 +0.0
4,221,176 + ABIE41_RS20530 0.36 -0.3
4,221,176 + ABIE41_RS20530 0.36 +0.6
4,221,176 + ABIE41_RS20530 0.36 +0.2
4,221,176 + ABIE41_RS20530 0.36 +0.1
4,221,177 - ABIE41_RS20530 0.36 +1.1
4,221,177 - ABIE41_RS20530 0.36 +0.7
4,221,177 - ABIE41_RS20530 0.36 -3.4
4,221,177 - ABIE41_RS20530 0.36 +0.4
4,221,177 - ABIE41_RS20530 0.36 -0.2
4,221,177 - ABIE41_RS20530 0.36 -0.2
4,221,289 + ABIE41_RS20530 0.47 +0.2
4,221,289 + ABIE41_RS20530 0.47 +0.1
4,221,290 - ABIE41_RS20530 0.47 -2.7
4,221,293 - ABIE41_RS20530 0.47 +0.6
4,221,293 - ABIE41_RS20530 0.47 +1.6
4,221,454 + ABIE41_RS20530 0.63 -1.1
4,221,455 - ABIE41_RS20530 0.63 -0.5

Or see this region's nucleotide sequence