Experiment: L-Rhamnose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS20460 and ABIE41_RS20465 are separated by 82 nucleotides ABIE41_RS20465 and ABIE41_RS20470 are separated by 296 nucleotides
ABIE41_RS20460: ABIE41_RS20460 - aminotransferase class III-fold pyridoxal phosphate-dependent enzyme, at 4,204,862 to 4,206,190
_RS20460
ABIE41_RS20465: ABIE41_RS20465 - phosphotransferase, at 4,206,273 to 4,207,301
_RS20465
ABIE41_RS20470: ABIE41_RS20470 - MFS transporter, at 4,207,598 to 4,208,944
_RS20470
Position (kb) 4206
4207
4208 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4205.582 kb on - strand, within ABIE41_RS20460 at 4205.736 kb on + strand, within ABIE41_RS20460 at 4205.736 kb on + strand, within ABIE41_RS20460 at 4205.736 kb on + strand, within ABIE41_RS20460 at 4205.736 kb on + strand, within ABIE41_RS20460 at 4205.737 kb on - strand, within ABIE41_RS20460 at 4205.742 kb on + strand, within ABIE41_RS20460 at 4205.742 kb on + strand, within ABIE41_RS20460 at 4205.742 kb on + strand, within ABIE41_RS20460 at 4205.742 kb on + strand, within ABIE41_RS20460 at 4205.742 kb on + strand, within ABIE41_RS20460 at 4205.742 kb on + strand, within ABIE41_RS20460 at 4205.743 kb on - strand, within ABIE41_RS20460 at 4205.743 kb on - strand, within ABIE41_RS20460 at 4205.743 kb on - strand, within ABIE41_RS20460 at 4205.743 kb on - strand, within ABIE41_RS20460 at 4205.743 kb on - strand, within ABIE41_RS20460 at 4205.743 kb on - strand, within ABIE41_RS20460 at 4205.904 kb on + strand, within ABIE41_RS20460 at 4206.007 kb on - strand, within ABIE41_RS20460 at 4206.027 kb on + strand, within ABIE41_RS20460 at 4206.073 kb on - strand at 4206.084 kb on + strand at 4206.198 kb on - strand at 4206.198 kb on - strand at 4206.208 kb on + strand at 4206.208 kb on + strand at 4206.209 kb on - strand at 4206.303 kb on + strand at 4206.304 kb on - strand at 4206.371 kb on + strand at 4206.371 kb on + strand at 4206.372 kb on - strand at 4206.373 kb on + strand at 4206.374 kb on - strand at 4206.409 kb on + strand, within ABIE41_RS20465 at 4206.499 kb on + strand, within ABIE41_RS20465 at 4207.198 kb on + strand, within ABIE41_RS20465 at 4207.198 kb on + strand, within ABIE41_RS20465 at 4207.198 kb on + strand, within ABIE41_RS20465 at 4207.198 kb on + strand, within ABIE41_RS20465 at 4207.198 kb on + strand, within ABIE41_RS20465 at 4207.199 kb on - strand at 4207.199 kb on - strand at 4207.199 kb on - strand at 4207.199 kb on - strand at 4207.282 kb on + strand at 4207.282 kb on + strand at 4207.476 kb on + strand at 4207.626 kb on - strand at 4207.626 kb on - strand at 4207.667 kb on - strand at 4207.769 kb on + strand, within ABIE41_RS20470 at 4207.769 kb on + strand, within ABIE41_RS20470 at 4207.770 kb on - strand, within ABIE41_RS20470 at 4207.770 kb on - strand, within ABIE41_RS20470 at 4207.770 kb on - strand, within ABIE41_RS20470 at 4207.770 kb on - strand, within ABIE41_RS20470 at 4207.901 kb on + strand, within ABIE41_RS20470 at 4207.901 kb on + strand, within ABIE41_RS20470 at 4207.901 kb on + strand, within ABIE41_RS20470 at 4207.901 kb on + strand, within ABIE41_RS20470 at 4207.901 kb on + strand, within ABIE41_RS20470 at 4207.901 kb on + strand, within ABIE41_RS20470 at 4207.902 kb on - strand, within ABIE41_RS20470 at 4207.902 kb on - strand, within ABIE41_RS20470 at 4207.902 kb on - strand, within ABIE41_RS20470 at 4207.902 kb on - strand, within ABIE41_RS20470 at 4207.994 kb on + strand, within ABIE41_RS20470 at 4207.996 kb on + strand, within ABIE41_RS20470 at 4207.996 kb on + strand, within ABIE41_RS20470 at 4207.996 kb on + strand, within ABIE41_RS20470 at 4207.996 kb on + strand, within ABIE41_RS20470 at 4207.997 kb on - strand, within ABIE41_RS20470 at 4207.997 kb on - strand, within ABIE41_RS20470 at 4207.997 kb on - strand, within ABIE41_RS20470 at 4208.028 kb on - strand, within ABIE41_RS20470 at 4208.087 kb on + strand, within ABIE41_RS20470 at 4208.087 kb on + strand, within ABIE41_RS20470 at 4208.088 kb on - strand, within ABIE41_RS20470 at 4208.088 kb on - strand, within ABIE41_RS20470 at 4208.088 kb on - strand, within ABIE41_RS20470 at 4208.088 kb on - strand, within ABIE41_RS20470 at 4208.088 kb on - strand, within ABIE41_RS20470 at 4208.195 kb on + strand, within ABIE41_RS20470 at 4208.225 kb on + strand, within ABIE41_RS20470 at 4208.226 kb on - strand, within ABIE41_RS20470
Per-strain Table
Position Strand Gene LocusTag Fraction L-Rhamnose (C) remove 4,205,582 - ABIE41_RS20460 0.54 -0.6 4,205,736 + ABIE41_RS20460 0.66 +0.2 4,205,736 + ABIE41_RS20460 0.66 -0.7 4,205,736 + ABIE41_RS20460 0.66 -1.7 4,205,736 + ABIE41_RS20460 0.66 -0.3 4,205,737 - ABIE41_RS20460 0.66 -0.3 4,205,742 + ABIE41_RS20460 0.66 -0.2 4,205,742 + ABIE41_RS20460 0.66 -0.6 4,205,742 + ABIE41_RS20460 0.66 -1.5 4,205,742 + ABIE41_RS20460 0.66 -0.4 4,205,742 + ABIE41_RS20460 0.66 -1.7 4,205,742 + ABIE41_RS20460 0.66 -1.0 4,205,743 - ABIE41_RS20460 0.66 -0.3 4,205,743 - ABIE41_RS20460 0.66 -0.5 4,205,743 - ABIE41_RS20460 0.66 +0.5 4,205,743 - ABIE41_RS20460 0.66 -0.2 4,205,743 - ABIE41_RS20460 0.66 +0.8 4,205,743 - ABIE41_RS20460 0.66 -0.1 4,205,904 + ABIE41_RS20460 0.78 +0.2 4,206,007 - ABIE41_RS20460 0.86 -0.5 4,206,027 + ABIE41_RS20460 0.88 +0.5 4,206,073 - +1.5 4,206,084 + +0.7 4,206,198 - -1.6 4,206,198 - -0.2 4,206,208 + +1.6 4,206,208 + +0.2 4,206,209 - +0.4 4,206,303 + +0.2 4,206,304 - -1.2 4,206,371 + +0.7 4,206,371 + -0.1 4,206,372 - +0.4 4,206,373 + -1.1 4,206,374 - +0.2 4,206,409 + ABIE41_RS20465 0.13 +1.6 4,206,499 + ABIE41_RS20465 0.22 +0.5 4,207,198 + ABIE41_RS20465 0.90 +0.1 4,207,198 + ABIE41_RS20465 0.90 +0.2 4,207,198 + ABIE41_RS20465 0.90 -0.4 4,207,198 + ABIE41_RS20465 0.90 -0.3 4,207,198 + ABIE41_RS20465 0.90 -2.6 4,207,199 - +0.9 4,207,199 - +0.2 4,207,199 - +0.4 4,207,199 - -1.8 4,207,282 + -0.7 4,207,282 + -0.1 4,207,476 + +0.6 4,207,626 - -1.4 4,207,626 - -1.2 4,207,667 - -1.0 4,207,769 + ABIE41_RS20470 0.13 -0.6 4,207,769 + ABIE41_RS20470 0.13 -0.1 4,207,770 - ABIE41_RS20470 0.13 -1.4 4,207,770 - ABIE41_RS20470 0.13 -0.1 4,207,770 - ABIE41_RS20470 0.13 -1.0 4,207,770 - ABIE41_RS20470 0.13 +0.1 4,207,901 + ABIE41_RS20470 0.22 -1.2 4,207,901 + ABIE41_RS20470 0.22 -0.5 4,207,901 + ABIE41_RS20470 0.22 -2.7 4,207,901 + ABIE41_RS20470 0.22 -1.5 4,207,901 + ABIE41_RS20470 0.22 +2.9 4,207,901 + ABIE41_RS20470 0.22 +1.0 4,207,902 - ABIE41_RS20470 0.23 -1.1 4,207,902 - ABIE41_RS20470 0.23 -0.4 4,207,902 - ABIE41_RS20470 0.23 -0.4 4,207,902 - ABIE41_RS20470 0.23 -0.1 4,207,994 + ABIE41_RS20470 0.29 +0.6 4,207,996 + ABIE41_RS20470 0.30 -0.3 4,207,996 + ABIE41_RS20470 0.30 -0.7 4,207,996 + ABIE41_RS20470 0.30 +0.0 4,207,996 + ABIE41_RS20470 0.30 +1.6 4,207,997 - ABIE41_RS20470 0.30 -1.0 4,207,997 - ABIE41_RS20470 0.30 -0.4 4,207,997 - ABIE41_RS20470 0.30 +0.0 4,208,028 - ABIE41_RS20470 0.32 -0.1 4,208,087 + ABIE41_RS20470 0.36 -2.3 4,208,087 + ABIE41_RS20470 0.36 -0.2 4,208,088 - ABIE41_RS20470 0.36 -3.5 4,208,088 - ABIE41_RS20470 0.36 +0.8 4,208,088 - ABIE41_RS20470 0.36 +0.4 4,208,088 - ABIE41_RS20470 0.36 -1.4 4,208,088 - ABIE41_RS20470 0.36 -0.8 4,208,195 + ABIE41_RS20470 0.44 -0.1 4,208,225 + ABIE41_RS20470 0.47 -0.2 4,208,226 - ABIE41_RS20470 0.47 -0.0
Or see this region's nucleotide sequence