Strain Fitness in Bosea sp. OAE506 around ABIE41_RS07805

Experiment: L-Rhamnose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS07800 and ABIE41_RS07805 are separated by 158 nucleotidesABIE41_RS07805 and ABIE41_RS07810 are separated by 108 nucleotides ABIE41_RS07800: ABIE41_RS07800 - lysine--tRNA ligase, at 1,601,734 to 1,603,443 _RS07800 ABIE41_RS07805: ABIE41_RS07805 - amidohydrolase, at 1,603,602 to 1,604,765 _RS07805 ABIE41_RS07810: ABIE41_RS07810 - transporter substrate-binding domain-containing protein, at 1,604,874 to 1,605,704 _RS07810 Position (kb) 1603 1604 1605Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 1603.562 kb on + strandat 1603.563 kb on - strandat 1603.564 kb on + strandat 1603.565 kb on - strandat 1603.565 kb on - strandat 1603.565 kb on - strandat 1603.565 kb on - strandat 1603.565 kb on - strandat 1603.565 kb on - strandat 1603.565 kb on - strandat 1603.565 kb on - strandat 1603.854 kb on + strand, within ABIE41_RS07805at 1603.854 kb on + strand, within ABIE41_RS07805at 1603.854 kb on + strand, within ABIE41_RS07805at 1603.854 kb on + strand, within ABIE41_RS07805at 1603.854 kb on + strand, within ABIE41_RS07805at 1604.259 kb on - strand, within ABIE41_RS07805at 1604.260 kb on + strand, within ABIE41_RS07805at 1604.610 kb on + strand, within ABIE41_RS07805at 1604.610 kb on + strand, within ABIE41_RS07805at 1604.611 kb on - strand, within ABIE41_RS07805at 1604.611 kb on - strand, within ABIE41_RS07805at 1604.611 kb on - strand, within ABIE41_RS07805at 1604.906 kb on - strandat 1604.917 kb on + strandat 1604.918 kb on - strandat 1604.918 kb on - strandat 1604.918 kb on - strandat 1604.950 kb on + strandat 1605.016 kb on + strand, within ABIE41_RS07810at 1605.016 kb on + strand, within ABIE41_RS07810at 1605.094 kb on - strand, within ABIE41_RS07810at 1605.202 kb on + strand, within ABIE41_RS07810at 1605.203 kb on - strand, within ABIE41_RS07810at 1605.319 kb on + strand, within ABIE41_RS07810at 1605.319 kb on + strand, within ABIE41_RS07810at 1605.320 kb on - strand, within ABIE41_RS07810at 1605.320 kb on - strand, within ABIE41_RS07810at 1605.320 kb on - strand, within ABIE41_RS07810at 1605.419 kb on + strand, within ABIE41_RS07810at 1605.538 kb on + strand, within ABIE41_RS07810

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Rhamnose (C)
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1,603,562 + +0.8
1,603,563 - -1.2
1,603,564 + -0.0
1,603,565 - +4.6
1,603,565 - +0.4
1,603,565 - +1.0
1,603,565 - -1.0
1,603,565 - -1.1
1,603,565 - -0.0
1,603,565 - -1.2
1,603,565 - +1.3
1,603,854 + ABIE41_RS07805 0.22 -0.4
1,603,854 + ABIE41_RS07805 0.22 +0.3
1,603,854 + ABIE41_RS07805 0.22 -1.7
1,603,854 + ABIE41_RS07805 0.22 +0.2
1,603,854 + ABIE41_RS07805 0.22 -0.4
1,604,259 - ABIE41_RS07805 0.56 +1.6
1,604,260 + ABIE41_RS07805 0.57 +0.2
1,604,610 + ABIE41_RS07805 0.87 +0.0
1,604,610 + ABIE41_RS07805 0.87 +0.5
1,604,611 - ABIE41_RS07805 0.87 -0.4
1,604,611 - ABIE41_RS07805 0.87 +0.0
1,604,611 - ABIE41_RS07805 0.87 +1.7
1,604,906 - -0.3
1,604,917 + +0.0
1,604,918 - +0.5
1,604,918 - +0.3
1,604,918 - +0.3
1,604,950 + -0.3
1,605,016 + ABIE41_RS07810 0.17 +0.1
1,605,016 + ABIE41_RS07810 0.17 +0.5
1,605,094 - ABIE41_RS07810 0.26 +0.3
1,605,202 + ABIE41_RS07810 0.39 -0.5
1,605,203 - ABIE41_RS07810 0.40 +1.3
1,605,319 + ABIE41_RS07810 0.54 -0.4
1,605,319 + ABIE41_RS07810 0.54 +0.4
1,605,320 - ABIE41_RS07810 0.54 +1.4
1,605,320 - ABIE41_RS07810 0.54 +1.1
1,605,320 - ABIE41_RS07810 0.54 -1.8
1,605,419 + ABIE41_RS07810 0.66 +0.8
1,605,538 + ABIE41_RS07810 0.80 +0.4

Or see this region's nucleotide sequence