Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS18880

Experiment: L-Threonine (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Threonine (C)
3,784,542	+		ABIE40_RS18875	0.43	-0.2
3,784,542	+		ABIE40_RS18875	0.43	-0.2
3,784,542	+		ABIE40_RS18875	0.43	+2.1
3,784,542	+		ABIE40_RS18875	0.43	-1.5
3,784,543	-		ABIE40_RS18875	0.43	+0.2
3,784,545	+		ABIE40_RS18875	0.43	+0.4
3,784,545	+		ABIE40_RS18875	0.43	+0.2
3,784,545	+		ABIE40_RS18875	0.43	+0.7
3,784,545	+		ABIE40_RS18875	0.43	+1.7
3,784,546	-		ABIE40_RS18875	0.43	-0.6
3,784,546	-		ABIE40_RS18875	0.43	-1.3
3,784,546	-		ABIE40_RS18875	0.43	-0.8
3,784,546	-		ABIE40_RS18875	0.43	-0.5
3,784,546	-		ABIE40_RS18875	0.43	-0.3
3,784,644	+		ABIE40_RS18875	0.50	-2.9
3,784,645	-		ABIE40_RS18875	0.50	+0.1
3,784,645	-		ABIE40_RS18875	0.50	+0.8
3,784,653	+		ABIE40_RS18875	0.50	-1.0
3,784,653	+		ABIE40_RS18875	0.50	+2.4
3,784,654	-		ABIE40_RS18875	0.50	-0.0
3,784,654	-		ABIE40_RS18875	0.50	+0.6
3,784,915	+		ABIE40_RS18875	0.67	-1.8
3,784,915	+		ABIE40_RS18875	0.67	-1.3
3,784,915	+		ABIE40_RS18875	0.67	-0.7
3,784,915	+		ABIE40_RS18875	0.67	-0.4
3,784,915	+		ABIE40_RS18875	0.67	-0.7
3,784,916	-		ABIE40_RS18875	0.67	+1.5
3,784,916	-		ABIE40_RS18875	0.67	+0.2
3,784,916	-		ABIE40_RS18875	0.67	-1.6
3,784,921	+		ABIE40_RS18875	0.68	+0.3
3,785,031	+		ABIE40_RS18875	0.75	-0.4
3,785,031	+		ABIE40_RS18875	0.75	-0.1
3,785,031	+		ABIE40_RS18875	0.75	+0.7
3,785,031	+		ABIE40_RS18875	0.75	-0.1
3,785,031	+		ABIE40_RS18875	0.75	-0.0
3,785,032	-		ABIE40_RS18875	0.75	+0.5
3,785,032	-		ABIE40_RS18875	0.75	+0.2
3,785,032	-		ABIE40_RS18875	0.75	-1.3
3,785,032	-		ABIE40_RS18875	0.75	-0.2
3,785,092	-		ABIE40_RS18875	0.79	+0.2
3,785,112	+		ABIE40_RS18875	0.80	-0.4
3,785,112	+		ABIE40_RS18875	0.80	-0.5
3,785,113	-		ABIE40_RS18875	0.80	+2.0
3,785,113	-		ABIE40_RS18875	0.80	+0.2
3,785,113	-		ABIE40_RS18875	0.80	+1.8
3,785,200	-		ABIE40_RS18875	0.86	+0.1
3,785,211	+		ABIE40_RS18875	0.86	-0.0
3,785,211	+		ABIE40_RS18875	0.86	-0.3
3,785,211	+		ABIE40_RS18875	0.86	+0.6
3,785,211	+		ABIE40_RS18875	0.86	-1.9
3,785,211	+		ABIE40_RS18875	0.86	+0.1
3,785,211	+		ABIE40_RS18875	0.86	+1.2
3,785,211	+		ABIE40_RS18875	0.86	-0.1
3,785,212	-		ABIE40_RS18875	0.86	-0.6
3,785,212	-		ABIE40_RS18875	0.86	+1.0
3,785,212	-		ABIE40_RS18875	0.86	+0.8
3,785,212	-		ABIE40_RS18875	0.86	+0.1
3,785,212	-		ABIE40_RS18875	0.86	-1.3
3,785,212	-		ABIE40_RS18875	0.86	-0.5
3,785,212	-		ABIE40_RS18875	0.86	-0.6
3,785,253	+		ABIE40_RS18875	0.89	+1.2
3,785,253	+		ABIE40_RS18875	0.89	-0.0
3,785,253	+		ABIE40_RS18875	0.89	-0.9
3,785,253	+		ABIE40_RS18875	0.89	-0.3
3,785,253	+		ABIE40_RS18875	0.89	+0.3
3,785,254	-		ABIE40_RS18875	0.89	+0.5
3,785,254	-		ABIE40_RS18875	0.89	-0.2
3,785,254	-		ABIE40_RS18875	0.89	-0.7
3,785,254	-		ABIE40_RS18875	0.89	-0.1
3,785,254	-		ABIE40_RS18875	0.89	-1.1
3,785,442	+				-2.7
3,785,442	+				-1.2
3,785,442	+				-3.3
3,785,442	+				-1.4
3,785,442	+				-1.9
3,785,443	-				-0.8
3,785,443	-				-1.5
3,785,443	-				-3.0
3,785,443	-				-3.0
3,785,443	-				-1.8
3,785,443	-				-2.2
3,785,462	-				-2.9
3,785,462	-				+0.1
3,785,462	-				-1.2
3,785,462	-				-2.3
3,785,501	+		ABIE40_RS18880	0.10	-0.2
3,785,544	-		ABIE40_RS18880	0.15	-3.5
3,785,544	-		ABIE40_RS18880	0.15	-2.2
3,785,544	-		ABIE40_RS18880	0.15	-1.6
3,785,545	+		ABIE40_RS18880	0.15	-1.7
3,785,545	+		ABIE40_RS18880	0.15	-0.8
3,785,545	+		ABIE40_RS18880	0.15	-1.2
3,785,546	-		ABIE40_RS18880	0.15	-1.1
3,785,546	-		ABIE40_RS18880	0.15	-0.4
3,785,546	-		ABIE40_RS18880	0.15	+1.8
3,785,710	+		ABIE40_RS18880	0.32	-1.8
3,785,710	+		ABIE40_RS18880	0.32	-2.8
3,785,710	+		ABIE40_RS18880	0.32	-2.1
3,785,711	-		ABIE40_RS18880	0.32	+1.1
3,785,711	-		ABIE40_RS18880	0.32	-2.9
3,785,743	+		ABIE40_RS18880	0.35	+1.8
3,785,743	+		ABIE40_RS18880	0.35	-3.3
3,785,744	-		ABIE40_RS18880	0.35	+0.1
3,785,876	-		ABIE40_RS18880	0.48	-3.7
3,785,903	+		ABIE40_RS18880	0.51	-3.9
3,785,903	+		ABIE40_RS18880	0.51	-3.0
3,785,903	+		ABIE40_RS18880	0.51	+1.8
3,785,903	+		ABIE40_RS18880	0.51	-1.6
3,785,903	+		ABIE40_RS18880	0.51	+1.8
3,785,903	+		ABIE40_RS18880	0.51	-2.5
3,785,903	+		ABIE40_RS18880	0.51	-1.7
3,785,903	+		ABIE40_RS18880	0.51	-0.8
3,785,904	-		ABIE40_RS18880	0.51	-2.2
3,785,904	-		ABIE40_RS18880	0.51	-2.1
3,785,904	-		ABIE40_RS18880	0.51	-0.8
3,785,904	-		ABIE40_RS18880	0.51	-2.8
3,785,904	-		ABIE40_RS18880	0.51	-2.9
3,785,904	-		ABIE40_RS18880	0.51	-2.2
3,785,905	+		ABIE40_RS18880	0.51	-1.9
3,785,905	+		ABIE40_RS18880	0.51	+1.8
3,785,905	+		ABIE40_RS18880	0.51	+0.8
3,785,905	+		ABIE40_RS18880	0.51	-2.5
3,785,905	+		ABIE40_RS18880	0.51	-1.0
3,785,905	+		ABIE40_RS18880	0.51	-0.2
3,785,906	-		ABIE40_RS18880	0.51	-1.9
3,785,906	-		ABIE40_RS18880	0.51	-2.3
3,785,906	-		ABIE40_RS18880	0.51	-2.8
3,785,906	-		ABIE40_RS18880	0.51	-2.1
3,785,906	-		ABIE40_RS18880	0.51	-1.4
3,785,906	-		ABIE40_RS18880	0.51	-2.0
3,785,906	-		ABIE40_RS18880	0.51	-1.5
3,785,906	-		ABIE40_RS18880	0.51	-1.6
3,785,906	-		ABIE40_RS18880	0.51	-3.0
3,785,906	-		ABIE40_RS18880	0.51	-2.6
3,785,914	+		ABIE40_RS18880	0.52	-0.0
3,785,915	-		ABIE40_RS18880	0.52	-2.2
3,785,941	+		ABIE40_RS18880	0.55	-1.7
3,785,941	+		ABIE40_RS18880	0.55	-1.0
3,785,941	+		ABIE40_RS18880	0.55	-3.2
3,785,941	+		ABIE40_RS18880	0.55	-1.2
3,785,941	+		ABIE40_RS18880	0.55	-2.7
3,785,941	+		ABIE40_RS18880	0.55	-2.1
3,785,941	+		ABIE40_RS18880	0.55	-2.2
3,785,942	-		ABIE40_RS18880	0.55	-2.2
3,785,942	-		ABIE40_RS18880	0.55	-0.2
3,785,942	-		ABIE40_RS18880	0.55	-1.6
3,785,956	+		ABIE40_RS18880	0.57	-1.2
3,785,956	+		ABIE40_RS18880	0.57	-1.2
3,786,016	+		ABIE40_RS18880	0.63	-0.9
3,786,017	-		ABIE40_RS18880	0.63	-1.5
3,786,017	-		ABIE40_RS18880	0.63	-3.8
3,786,109	+		ABIE40_RS18880	0.72	-2.7
3,786,109	+		ABIE40_RS18880	0.72	-2.6
3,786,110	-		ABIE40_RS18880	0.72	-2.1
3,786,110	-		ABIE40_RS18880	0.72	-2.2
3,786,110	-		ABIE40_RS18880	0.72	-0.8
3,786,110	-		ABIE40_RS18880	0.72	-0.2
3,786,299	+				-4.1
3,786,299	+				+1.3
3,786,299	+				-1.4
3,786,299	+				-3.3
3,786,299	+				-2.0
3,786,299	+				-1.8
3,786,299	+				-4.2
3,786,299	+				+0.4
3,786,299	+				-1.6
3,786,300	-				-2.3
3,786,300	-				-2.9
3,786,300	-				+1.8
3,786,300	-				-2.7
3,786,300	-				-2.0
3,786,300	-				-2.1
3,786,300	-				-0.5
3,786,300	-				-2.7
3,786,300	-				+1.8
3,786,300	-				-1.8
3,786,300	-				-2.1
3,786,301	+				-2.8
3,786,301	+				-0.5
3,786,302	-				-1.4
3,786,302	-				-1.4
3,786,329	+				-2.0
3,786,329	+				-3.1
3,786,329	+				-3.3
3,786,329	+				+1.8
3,786,330	-				-0.8
3,786,330	-				+0.8
3,786,330	-				-2.5
3,786,330	-				-2.3
3,786,330	-				+0.8
3,786,330	-				-3.3
3,786,330	-				-3.4
3,786,342	-				-3.2
3,786,343	+				-2.2
3,786,343	+				-0.8
3,786,343	+				+2.8
3,786,343	+				-2.8
3,786,420	+				+0.2
3,786,420	+				-0.5
3,786,420	+				+0.3
3,786,420	+				-1.5
3,786,421	-				-0.0
3,786,441	-				+0.6
3,786,485	+				+0.2
3,786,485	+				-0.4
3,786,485	+				-0.3
3,786,487	+				+1.2
3,786,487	+				+1.8
3,786,487	+				-0.2
3,786,487	+				-1.6
3,786,487	+				-0.3
3,786,487	+				-0.3
3,786,488	-				-0.0
3,786,488	-				-1.1
3,786,488	-				-0.0
3,786,488	-				+0.4
3,786,488	-				-0.0
3,786,488	-				-0.4
3,786,488	-				-1.5
3,786,497	+				+0.5
3,786,497	+				+1.0
3,786,498	-				-1.1
3,786,498	-				-2.5
3,786,544	+				-0.3
3,786,544	+				+1.8
3,786,544	+				-0.0
3,786,544	+				+0.3
3,786,544	+				-1.4
3,786,544	+				-0.2
3,786,544	+				+0.9
3,786,544	+				-1.7
3,786,544	+				-0.2
3,786,545	-				-0.2
3,786,545	-				-0.8
3,786,545	-				-1.1
3,786,545	-				-0.6
3,786,545	-				-2.6
3,786,545	-				+0.4
3,786,545	-				-1.6
3,786,545	-				-0.2
3,786,786	+				-0.1
3,786,880	+				-0.9
3,786,880	+				+1.9
3,786,893	+				-1.1