Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS05855

Experiment: L-Threonine (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Threonine (C)
1,152,377	-		ABIE40_RS05850	0.33	-1.2
1,152,386	+		ABIE40_RS05850	0.34	+1.2
1,152,405	-		ABIE40_RS05850	0.36	-0.0
1,152,519	+		ABIE40_RS05850	0.48	-0.4
1,152,519	+		ABIE40_RS05850	0.48	+0.2
1,152,520	-		ABIE40_RS05850	0.48	+0.6
1,152,693	+		ABIE40_RS05850	0.66	-1.1
1,152,693	+		ABIE40_RS05850	0.66	-0.8
1,152,694	-		ABIE40_RS05850	0.66	-0.3
1,152,694	-		ABIE40_RS05850	0.66	-0.3
1,152,729	+		ABIE40_RS05850	0.70	-1.0
1,152,729	+		ABIE40_RS05850	0.70	+0.8
1,152,729	+		ABIE40_RS05850	0.70	-0.3
1,152,729	+		ABIE40_RS05850	0.70	+0.4
1,152,730	-		ABIE40_RS05850	0.70	-0.8
1,152,730	-		ABIE40_RS05850	0.70	-0.4
1,152,730	-		ABIE40_RS05850	0.70	+0.6
1,152,730	-		ABIE40_RS05850	0.70	-1.4
1,152,730	-		ABIE40_RS05850	0.70	+1.5
1,152,730	-		ABIE40_RS05850	0.70	+1.1
1,152,730	-		ABIE40_RS05850	0.70	-0.4
1,152,730	-		ABIE40_RS05850	0.70	-0.5
1,152,730	-		ABIE40_RS05850	0.70	+0.7
1,152,730	-		ABIE40_RS05850	0.70	+0.0
1,152,730	-		ABIE40_RS05850	0.70	-0.6
1,152,731	+		ABIE40_RS05850	0.70	+0.8
1,152,779	+		ABIE40_RS05850	0.75	+1.2
1,152,780	-		ABIE40_RS05850	0.75	-0.5
1,153,012	-				-0.3
1,153,028	-				-2.1
1,153,029	+				+1.0
1,153,029	+				-0.3
1,153,029	+				-0.4
1,153,029	+				-0.3
1,153,029	+				+0.8
1,153,029	+				+0.4
1,153,029	+				+2.6
1,153,029	+				+0.2
1,153,030	-				+0.2
1,153,030	-				-0.5
1,153,030	-				-1.3
1,153,030	-				-2.0
1,153,100	-				-1.2
1,153,100	-				-0.4
1,153,197	+				+0.4
1,153,198	-				+0.0
1,153,198	-				-0.8
1,153,207	+				+0.8
1,153,207	+				-0.6
1,153,207	+				+0.2
1,153,208	-				-0.0
1,153,208	-				+1.6
1,153,208	-				-0.7
1,153,266	+				+0.2
1,153,266	+				+0.1
1,153,266	+				-0.1
1,153,266	+				+0.1
1,153,267	-				-0.2
1,153,267	-				-0.1
1,153,267	-				-1.2
1,153,267	-				+0.2
1,153,267	-				-0.0
1,153,267	-				+0.5
1,153,267	-				-0.3
1,153,267	-				-1.2
1,153,268	+				-0.7
1,153,268	+				-2.1
1,153,284	+				-0.5
1,153,284	+				+1.1
1,153,284	+				-1.4
1,153,284	+				+0.3
1,153,299	+				-0.4
1,153,299	+				+1.4
1,153,300	-				-0.7
1,153,300	-				+2.2
1,153,300	-				-1.0
1,153,300	-				+1.4
1,153,308	+				-0.0
1,153,327	+				+0.1
1,153,353	+				+0.9
1,153,353	+				+0.8
1,153,353	+				-0.2
1,153,353	+				-1.0
1,153,353	+				-0.2
1,153,353	+				-0.5
1,153,361	-				-0.3
1,153,369	-				-0.8
1,153,465	+		ABIE40_RS05855	0.13	-0.7
1,153,465	+		ABIE40_RS05855	0.13	-0.4
1,153,465	+		ABIE40_RS05855	0.13	+1.4
1,153,466	-		ABIE40_RS05855	0.14	-1.8
1,153,657	-		ABIE40_RS05855	0.28	-0.9
1,153,666	+		ABIE40_RS05855	0.28	-0.2
1,153,881	+		ABIE40_RS05855	0.44	+0.1
1,153,950	+		ABIE40_RS05855	0.49	+0.1
1,153,951	-		ABIE40_RS05855	0.49	+0.0
1,153,951	-		ABIE40_RS05855	0.49	+0.1
1,153,951	-		ABIE40_RS05855	0.49	-1.2
1,154,067	+		ABIE40_RS05855	0.58	-1.2
1,154,068	-		ABIE40_RS05855	0.58	-0.4
1,154,088	+		ABIE40_RS05855	0.59	-0.0
1,154,089	-		ABIE40_RS05855	0.60	-0.3
1,154,122	-		ABIE40_RS05855	0.62	-1.7
1,154,122	-		ABIE40_RS05855	0.62	-0.5
1,154,130	+		ABIE40_RS05855	0.63	-0.9
1,154,131	-		ABIE40_RS05855	0.63	+0.2
1,154,151	+		ABIE40_RS05855	0.64	-0.6
1,154,152	-		ABIE40_RS05855	0.64	-1.6
1,154,212	-		ABIE40_RS05855	0.69	-0.1
1,154,212	-		ABIE40_RS05855	0.69	+0.2
1,154,212	-		ABIE40_RS05855	0.69	-0.3
1,154,468	-		ABIE40_RS05855	0.88	-0.5
1,154,672	-				+0.6
1,154,731	+				-0.3
1,154,732	-				+0.2
1,154,774	+				+0.4
1,154,815	-				-0.9
1,154,847	+				-0.6
1,154,848	-				-2.8
1,154,872	+		ABIE40_RS05860	0.11	+1.1
1,154,872	+		ABIE40_RS05860	0.11	+0.4
1,154,872	+		ABIE40_RS05860	0.11	+3.0
1,154,872	+		ABIE40_RS05860	0.11	-0.3
1,154,873	-		ABIE40_RS05860	0.11	+0.4
1,154,873	-		ABIE40_RS05860	0.11	+0.6
1,154,969	-		ABIE40_RS05860	0.18	+1.1
1,154,971	+		ABIE40_RS05860	0.18	-0.1
1,154,971	+		ABIE40_RS05860	0.18	-0.2
1,154,971	+		ABIE40_RS05860	0.18	+0.3
1,154,971	+		ABIE40_RS05860	0.18	+1.4
1,154,971	+		ABIE40_RS05860	0.18	-0.3
1,154,971	+		ABIE40_RS05860	0.18	+0.3
1,154,971	+		ABIE40_RS05860	0.18	+0.5
1,154,971	+		ABIE40_RS05860	0.18	+0.8
1,154,972	-		ABIE40_RS05860	0.18	-0.6
1,154,972	-		ABIE40_RS05860	0.18	+1.6
1,154,972	-		ABIE40_RS05860	0.18	-0.1
1,154,972	-		ABIE40_RS05860	0.18	+0.7
1,154,972	-		ABIE40_RS05860	0.18	+0.2
1,154,972	-		ABIE40_RS05860	0.18	-0.7
1,154,972	-		ABIE40_RS05860	0.18	-2.2
1,154,972	-		ABIE40_RS05860	0.18	+0.3
1,155,093	+		ABIE40_RS05860	0.27	+0.6
1,155,093	+		ABIE40_RS05860	0.27	+0.8
1,155,093	+		ABIE40_RS05860	0.27	+0.2
1,155,094	-		ABIE40_RS05860	0.27	+0.5
1,155,094	-		ABIE40_RS05860	0.27	+1.9
1,155,094	-		ABIE40_RS05860	0.27	+0.2
1,155,094	-		ABIE40_RS05860	0.27	+0.4
1,155,094	-		ABIE40_RS05860	0.27	-2.8
1,155,119	-		ABIE40_RS05860	0.29	-0.9
1,155,176	-		ABIE40_RS05860	0.33	-0.1
1,155,176	-		ABIE40_RS05860	0.33	+0.1
1,155,220	+		ABIE40_RS05860	0.37	+0.1
1,155,220	+		ABIE40_RS05860	0.37	-0.3
1,155,221	-		ABIE40_RS05860	0.37	+0.9
1,155,221	-		ABIE40_RS05860	0.37	-0.8
1,155,221	-		ABIE40_RS05860	0.37	-0.3
1,155,221	-		ABIE40_RS05860	0.37	-0.8
1,155,221	-		ABIE40_RS05860	0.37	+0.4
1,155,278	-		ABIE40_RS05860	0.41	-0.1
1,155,283	+		ABIE40_RS05860	0.41	-0.4
1,155,439	+		ABIE40_RS05860	0.53	-0.4
1,155,440	-		ABIE40_RS05860	0.53	+1.0
1,155,440	-		ABIE40_RS05860	0.53	+0.4
1,155,544	+		ABIE40_RS05860	0.60	-1.4
1,155,544	+		ABIE40_RS05860	0.60	-0.4
1,155,544	+		ABIE40_RS05860	0.60	+0.5
1,155,545	-		ABIE40_RS05860	0.60	+0.3
1,155,545	-		ABIE40_RS05860	0.60	+0.8
1,155,545	-		ABIE40_RS05860	0.60	+1.2
1,155,548	-		ABIE40_RS05860	0.61	+0.1
1,155,548	-		ABIE40_RS05860	0.61	+0.0
1,155,598	+		ABIE40_RS05860	0.64	-1.5
1,155,598	+		ABIE40_RS05860	0.64	-0.9
1,155,598	+		ABIE40_RS05860	0.64	-2.5
1,155,599	-		ABIE40_RS05860	0.64	+0.3