Experiment: L-Threonine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS01040 and ABIE40_RS01045 overlap by 4 nucleotides ABIE40_RS01045 and ABIE40_RS01050 overlap by 4 nucleotides ABIE40_RS01050 and ABIE40_RS01055 are separated by 134 nucleotides ABIE40_RS01055 and ABIE40_RS01060 are separated by 129 nucleotides ABIE40_RS01060 and ABIE40_RS01065 are separated by 17 nucleotides
ABIE40_RS01040: ABIE40_RS01040 - sugar O-acetyltransferase, at 210,940 to 211,545
_RS01040
ABIE40_RS01045: ABIE40_RS01045 - GFA family protein, at 211,542 to 212,000
_RS01045
ABIE40_RS01050: ABIE40_RS01050 - type II toxin-antitoxin system CcdA family antitoxin, at 211,997 to 212,185
_RS01050
ABIE40_RS01055: ABIE40_RS01055 - translation elongation factor 4, at 212,320 to 214,152
_RS01055
ABIE40_RS01060: ABIE40_RS01060 - XRE family transcriptional regulator, at 214,282 to 214,851
_RS01060
ABIE40_RS01065: ABIE40_RS01065 - GNAT family N-acetyltransferase, at 214,869 to 215,390
_RS01065
Position (kb) 212
213
214
215 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 211.515 kb on - strand at 211.527 kb on + strand at 211.527 kb on + strand at 211.527 kb on + strand at 211.528 kb on - strand at 211.528 kb on - strand at 211.538 kb on + strand at 211.538 kb on + strand at 211.538 kb on + strand at 211.539 kb on - strand at 211.539 kb on - strand at 211.592 kb on - strand, within ABIE40_RS01045 at 211.672 kb on - strand, within ABIE40_RS01045 at 211.764 kb on + strand, within ABIE40_RS01045 at 211.764 kb on + strand, within ABIE40_RS01045 at 211.764 kb on + strand, within ABIE40_RS01045 at 211.765 kb on - strand, within ABIE40_RS01045 at 211.765 kb on - strand, within ABIE40_RS01045 at 211.928 kb on + strand, within ABIE40_RS01045 at 211.928 kb on + strand, within ABIE40_RS01045 at 211.928 kb on + strand, within ABIE40_RS01045 at 211.928 kb on + strand, within ABIE40_RS01045 at 211.928 kb on + strand, within ABIE40_RS01045 at 211.928 kb on + strand, within ABIE40_RS01045 at 211.928 kb on + strand, within ABIE40_RS01045 at 211.928 kb on + strand, within ABIE40_RS01045 at 211.928 kb on + strand, within ABIE40_RS01045 at 211.928 kb on + strand, within ABIE40_RS01045 at 211.928 kb on + strand, within ABIE40_RS01045 at 211.928 kb on + strand, within ABIE40_RS01045 at 211.928 kb on + strand, within ABIE40_RS01045 at 211.928 kb on + strand, within ABIE40_RS01045 at 211.928 kb on + strand, within ABIE40_RS01045 at 211.928 kb on + strand, within ABIE40_RS01045 at 211.928 kb on + strand, within ABIE40_RS01045 at 211.928 kb on + strand, within ABIE40_RS01045 at 211.928 kb on + strand, within ABIE40_RS01045 at 211.928 kb on + strand, within ABIE40_RS01045 at 211.928 kb on + strand, within ABIE40_RS01045 at 211.929 kb on - strand, within ABIE40_RS01045 at 211.929 kb on - strand, within ABIE40_RS01045 at 211.929 kb on - strand, within ABIE40_RS01045 at 211.929 kb on - strand, within ABIE40_RS01045 at 211.929 kb on - strand, within ABIE40_RS01045 at 211.929 kb on - strand, within ABIE40_RS01045 at 211.929 kb on - strand, within ABIE40_RS01045 at 211.929 kb on - strand, within ABIE40_RS01045 at 211.929 kb on - strand, within ABIE40_RS01045 at 211.929 kb on - strand, within ABIE40_RS01045 at 211.929 kb on - strand, within ABIE40_RS01045 at 211.929 kb on - strand, within ABIE40_RS01045 at 211.929 kb on - strand, within ABIE40_RS01045 at 211.929 kb on - strand, within ABIE40_RS01045 at 211.929 kb on - strand, within ABIE40_RS01045 at 211.932 kb on + strand, within ABIE40_RS01045 at 211.932 kb on + strand, within ABIE40_RS01045 at 211.933 kb on - strand, within ABIE40_RS01045 at 211.959 kb on + strand at 211.959 kb on + strand at 211.959 kb on + strand at 211.960 kb on - strand at 211.960 kb on - strand at 211.960 kb on - strand at 211.980 kb on + strand at 211.980 kb on + strand at 211.980 kb on + strand at 211.980 kb on + strand at 211.980 kb on + strand at 211.980 kb on + strand at 211.980 kb on + strand at 211.980 kb on + strand at 211.980 kb on + strand at 211.981 kb on - strand at 211.981 kb on - strand at 211.981 kb on - strand at 211.981 kb on - strand at 211.981 kb on - strand at 211.981 kb on - strand at 211.981 kb on - strand at 211.982 kb on + strand at 211.982 kb on + strand at 211.982 kb on + strand at 211.982 kb on + strand at 211.983 kb on - strand at 211.983 kb on - strand at 211.983 kb on - strand at 211.983 kb on - strand at 211.998 kb on + strand at 211.998 kb on + strand at 211.999 kb on - strand at 212.031 kb on + strand, within ABIE40_RS01050 at 212.031 kb on + strand, within ABIE40_RS01050 at 212.031 kb on + strand, within ABIE40_RS01050 at 212.031 kb on + strand, within ABIE40_RS01050 at 212.031 kb on + strand, within ABIE40_RS01050 at 212.031 kb on + strand, within ABIE40_RS01050 at 212.032 kb on - strand, within ABIE40_RS01050 at 212.032 kb on - strand, within ABIE40_RS01050 at 212.032 kb on - strand, within ABIE40_RS01050 at 212.032 kb on - strand, within ABIE40_RS01050 at 212.032 kb on - strand, within ABIE40_RS01050 at 212.032 kb on - strand, within ABIE40_RS01050 at 212.150 kb on + strand, within ABIE40_RS01050 at 212.151 kb on - strand, within ABIE40_RS01050 at 212.151 kb on - strand, within ABIE40_RS01050 at 212.173 kb on + strand at 212.173 kb on + strand at 212.173 kb on + strand at 212.173 kb on + strand at 212.174 kb on - strand at 212.174 kb on - strand at 212.174 kb on - strand at 212.174 kb on - strand at 212.174 kb on - strand at 212.174 kb on - strand at 212.174 kb on - strand at 212.174 kb on - strand at 212.179 kb on + strand at 212.180 kb on - strand at 212.216 kb on + strand at 212.216 kb on + strand at 212.321 kb on + strand at 212.321 kb on + strand at 212.322 kb on - strand at 212.547 kb on + strand, within ABIE40_RS01055 at 212.547 kb on + strand, within ABIE40_RS01055 at 212.547 kb on + strand, within ABIE40_RS01055 at 212.548 kb on - strand, within ABIE40_RS01055 at 212.721 kb on - strand, within ABIE40_RS01055 at 212.721 kb on - strand, within ABIE40_RS01055 at 212.750 kb on + strand, within ABIE40_RS01055 at 212.787 kb on - strand, within ABIE40_RS01055 at 212.813 kb on + strand, within ABIE40_RS01055 at 212.813 kb on + strand, within ABIE40_RS01055 at 212.814 kb on - strand, within ABIE40_RS01055 at 212.814 kb on - strand, within ABIE40_RS01055 at 212.874 kb on - strand, within ABIE40_RS01055 at 212.874 kb on - strand, within ABIE40_RS01055 at 213.419 kb on + strand, within ABIE40_RS01055 at 213.420 kb on - strand, within ABIE40_RS01055 at 213.420 kb on - strand, within ABIE40_RS01055 at 213.506 kb on + strand, within ABIE40_RS01055 at 213.516 kb on - strand, within ABIE40_RS01055 at 213.907 kb on - strand, within ABIE40_RS01055 at 213.908 kb on + strand, within ABIE40_RS01055 at 213.908 kb on + strand, within ABIE40_RS01055 at 213.909 kb on - strand, within ABIE40_RS01055 at 213.909 kb on - strand, within ABIE40_RS01055 at 213.909 kb on - strand, within ABIE40_RS01055 at 213.909 kb on - strand, within ABIE40_RS01055 at 213.909 kb on - strand, within ABIE40_RS01055 at 214.152 kb on + strand at 214.153 kb on - strand at 214.153 kb on - strand at 214.153 kb on - strand at 214.153 kb on - strand at 214.153 kb on - strand at 214.154 kb on + strand at 214.154 kb on + strand at 214.155 kb on - strand at 214.155 kb on - strand at 214.155 kb on - strand at 214.155 kb on - strand at 214.206 kb on - strand at 214.206 kb on - strand at 214.281 kb on + strand at 214.282 kb on - strand at 214.282 kb on - strand at 214.561 kb on + strand, within ABIE40_RS01060 at 214.562 kb on - strand, within ABIE40_RS01060 at 214.674 kb on + strand, within ABIE40_RS01060 at 214.675 kb on - strand, within ABIE40_RS01060 at 214.675 kb on - strand, within ABIE40_RS01060 at 214.686 kb on + strand, within ABIE40_RS01060 at 214.686 kb on + strand, within ABIE40_RS01060 at 214.686 kb on + strand, within ABIE40_RS01060 at 214.686 kb on + strand, within ABIE40_RS01060 at 214.686 kb on + strand, within ABIE40_RS01060 at 214.687 kb on - strand, within ABIE40_RS01060 at 214.687 kb on - strand, within ABIE40_RS01060 at 214.687 kb on - strand, within ABIE40_RS01060 at 214.687 kb on - strand, within ABIE40_RS01060 at 214.687 kb on - strand, within ABIE40_RS01060 at 214.687 kb on - strand, within ABIE40_RS01060 at 214.820 kb on - strand at 214.865 kb on + strand at 214.865 kb on + strand at 214.865 kb on + strand at 214.865 kb on + strand at 214.865 kb on + strand at 214.865 kb on + strand at 214.865 kb on + strand at 214.866 kb on - strand at 214.866 kb on - strand at 214.866 kb on - strand at 214.866 kb on - strand at 214.983 kb on + strand, within ABIE40_RS01065 at 214.983 kb on + strand, within ABIE40_RS01065 at 214.983 kb on + strand, within ABIE40_RS01065 at 214.983 kb on + strand, within ABIE40_RS01065 at 214.986 kb on - strand, within ABIE40_RS01065 at 214.986 kb on - strand, within ABIE40_RS01065
Per-strain Table
Position Strand Gene LocusTag Fraction L-Threonine (C) remove 211,515 - -0.1 211,527 + -0.4 211,527 + -0.1 211,527 + -0.9 211,528 - -0.9 211,528 - -0.3 211,538 + -0.7 211,538 + +0.4 211,538 + -2.9 211,539 - -1.0 211,539 - +0.8 211,592 - ABIE40_RS01045 0.11 -1.1 211,672 - ABIE40_RS01045 0.28 +0.1 211,764 + ABIE40_RS01045 0.48 -1.5 211,764 + ABIE40_RS01045 0.48 +0.7 211,764 + ABIE40_RS01045 0.48 -1.3 211,765 - ABIE40_RS01045 0.49 +0.2 211,765 - ABIE40_RS01045 0.49 -1.5 211,928 + ABIE40_RS01045 0.84 -0.3 211,928 + ABIE40_RS01045 0.84 +0.2 211,928 + ABIE40_RS01045 0.84 -1.2 211,928 + ABIE40_RS01045 0.84 -0.7 211,928 + ABIE40_RS01045 0.84 -0.2 211,928 + ABIE40_RS01045 0.84 -0.8 211,928 + ABIE40_RS01045 0.84 -0.6 211,928 + ABIE40_RS01045 0.84 +0.7 211,928 + ABIE40_RS01045 0.84 +0.7 211,928 + ABIE40_RS01045 0.84 -0.4 211,928 + ABIE40_RS01045 0.84 -1.7 211,928 + ABIE40_RS01045 0.84 -1.7 211,928 + ABIE40_RS01045 0.84 +1.4 211,928 + ABIE40_RS01045 0.84 +1.1 211,928 + ABIE40_RS01045 0.84 -0.5 211,928 + ABIE40_RS01045 0.84 -0.6 211,928 + ABIE40_RS01045 0.84 -0.3 211,928 + ABIE40_RS01045 0.84 +0.7 211,928 + ABIE40_RS01045 0.84 -1.0 211,928 + ABIE40_RS01045 0.84 +1.6 211,928 + ABIE40_RS01045 0.84 -0.6 211,929 - ABIE40_RS01045 0.84 -0.1 211,929 - ABIE40_RS01045 0.84 +0.8 211,929 - ABIE40_RS01045 0.84 -0.4 211,929 - ABIE40_RS01045 0.84 -1.7 211,929 - ABIE40_RS01045 0.84 +0.4 211,929 - ABIE40_RS01045 0.84 -2.9 211,929 - ABIE40_RS01045 0.84 -2.0 211,929 - ABIE40_RS01045 0.84 -0.1 211,929 - ABIE40_RS01045 0.84 -0.0 211,929 - ABIE40_RS01045 0.84 -0.0 211,929 - ABIE40_RS01045 0.84 +0.2 211,929 - ABIE40_RS01045 0.84 +1.0 211,929 - ABIE40_RS01045 0.84 -2.7 211,929 - ABIE40_RS01045 0.84 -0.9 211,929 - ABIE40_RS01045 0.84 -0.5 211,932 + ABIE40_RS01045 0.85 -1.1 211,932 + ABIE40_RS01045 0.85 -2.7 211,933 - ABIE40_RS01045 0.85 -0.1 211,959 + -1.2 211,959 + -0.0 211,959 + -0.5 211,960 - +0.1 211,960 - +0.6 211,960 - -0.3 211,980 + +0.7 211,980 + -0.2 211,980 + +0.3 211,980 + -1.4 211,980 + +1.1 211,980 + -1.2 211,980 + -0.0 211,980 + +0.3 211,980 + -0.4 211,981 - -0.2 211,981 - +0.0 211,981 - +0.2 211,981 - +1.6 211,981 - -0.3 211,981 - +0.5 211,981 - +0.6 211,982 + -1.6 211,982 + -0.2 211,982 + -1.9 211,982 + +0.5 211,983 - -0.0 211,983 - +0.5 211,983 - +0.1 211,983 - +0.1 211,998 + +0.4 211,998 + +0.3 211,999 - -1.6 212,031 + ABIE40_RS01050 0.18 +0.6 212,031 + ABIE40_RS01050 0.18 +2.0 212,031 + ABIE40_RS01050 0.18 -0.5 212,031 + ABIE40_RS01050 0.18 -0.1 212,031 + ABIE40_RS01050 0.18 -0.6 212,031 + ABIE40_RS01050 0.18 +0.1 212,032 - ABIE40_RS01050 0.19 -0.7 212,032 - ABIE40_RS01050 0.19 +3.1 212,032 - ABIE40_RS01050 0.19 -0.6 212,032 - ABIE40_RS01050 0.19 -1.1 212,032 - ABIE40_RS01050 0.19 +0.1 212,032 - ABIE40_RS01050 0.19 -0.1 212,150 + ABIE40_RS01050 0.81 -0.7 212,151 - ABIE40_RS01050 0.81 -0.5 212,151 - ABIE40_RS01050 0.81 +0.8 212,173 + +0.6 212,173 + -1.5 212,173 + +0.6 212,173 + +0.2 212,174 - +0.5 212,174 - -0.7 212,174 - -0.2 212,174 - -1.2 212,174 - -0.6 212,174 - -1.0 212,174 - +0.5 212,174 - -0.3 212,179 + -0.2 212,180 - -1.2 212,216 + -0.3 212,216 + -0.1 212,321 + -1.9 212,321 + +0.1 212,322 - -0.1 212,547 + ABIE40_RS01055 0.12 -1.4 212,547 + ABIE40_RS01055 0.12 -1.7 212,547 + ABIE40_RS01055 0.12 -0.3 212,548 - ABIE40_RS01055 0.12 -0.7 212,721 - ABIE40_RS01055 0.22 +1.4 212,721 - ABIE40_RS01055 0.22 -1.9 212,750 + ABIE40_RS01055 0.23 -0.5 212,787 - ABIE40_RS01055 0.25 -2.1 212,813 + ABIE40_RS01055 0.27 -0.6 212,813 + ABIE40_RS01055 0.27 +1.8 212,814 - ABIE40_RS01055 0.27 +1.4 212,814 - ABIE40_RS01055 0.27 -1.9 212,874 - ABIE40_RS01055 0.30 -0.6 212,874 - ABIE40_RS01055 0.30 -1.7 213,419 + ABIE40_RS01055 0.60 -1.5 213,420 - ABIE40_RS01055 0.60 +0.7 213,420 - ABIE40_RS01055 0.60 -1.5 213,506 + ABIE40_RS01055 0.65 -2.0 213,516 - ABIE40_RS01055 0.65 -0.9 213,907 - ABIE40_RS01055 0.87 -1.3 213,908 + ABIE40_RS01055 0.87 -1.7 213,908 + ABIE40_RS01055 0.87 -2.5 213,909 - ABIE40_RS01055 0.87 -0.9 213,909 - ABIE40_RS01055 0.87 -2.0 213,909 - ABIE40_RS01055 0.87 -2.0 213,909 - ABIE40_RS01055 0.87 -1.0 213,909 - ABIE40_RS01055 0.87 +0.7 214,152 + -0.2 214,153 - -0.6 214,153 - -1.5 214,153 - +1.1 214,153 - -0.1 214,153 - -0.3 214,154 + -0.9 214,154 + -0.2 214,155 - -0.2 214,155 - +0.8 214,155 - -0.2 214,155 - -0.6 214,206 - +0.0 214,206 - -0.6 214,281 + -1.3 214,282 - -1.5 214,282 - -0.3 214,561 + ABIE40_RS01060 0.49 +0.9 214,562 - ABIE40_RS01060 0.49 -0.5 214,674 + ABIE40_RS01060 0.69 +1.4 214,675 - ABIE40_RS01060 0.69 -1.2 214,675 - ABIE40_RS01060 0.69 -0.2 214,686 + ABIE40_RS01060 0.71 -0.2 214,686 + ABIE40_RS01060 0.71 -0.1 214,686 + ABIE40_RS01060 0.71 -3.0 214,686 + ABIE40_RS01060 0.71 -0.5 214,686 + ABIE40_RS01060 0.71 -0.7 214,687 - ABIE40_RS01060 0.71 -1.0 214,687 - ABIE40_RS01060 0.71 -0.5 214,687 - ABIE40_RS01060 0.71 -0.9 214,687 - ABIE40_RS01060 0.71 -1.3 214,687 - ABIE40_RS01060 0.71 -2.9 214,687 - ABIE40_RS01060 0.71 +0.4 214,820 - +0.4 214,865 + +1.8 214,865 + -0.4 214,865 + -0.1 214,865 + -1.6 214,865 + -2.3 214,865 + -0.7 214,865 + -1.1 214,866 - +0.6 214,866 - +0.8 214,866 - -1.3 214,866 - +0.1 214,983 + ABIE40_RS01065 0.22 -1.1 214,983 + ABIE40_RS01065 0.22 +1.3 214,983 + ABIE40_RS01065 0.22 -0.4 214,983 + ABIE40_RS01065 0.22 -0.3 214,986 - ABIE40_RS01065 0.22 -0.0 214,986 - ABIE40_RS01065 0.22 -0.6
Or see this region's nucleotide sequence