Experiment: L-Threonine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS00570 and ABIE40_RS00575 are separated by 100 nucleotides ABIE40_RS00575 and ABIE40_RS00580 are separated by 45 nucleotides ABIE40_RS00580 and ABIE40_RS00585 are separated by 21 nucleotides ABIE40_RS00585 and ABIE40_RS00590 are separated by 18 nucleotides
ABIE40_RS00570: ABIE40_RS00570 - phosphonate C-P lyase system protein PhnG, at 117,715 to 118,179
_RS00570
ABIE40_RS00575: ABIE40_RS00575 - phosphonate metabolism transcriptional regulator PhnF, at 118,280 to 119,017
_RS00575
ABIE40_RS00580: ABIE40_RS00580 - 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase, at 119,063 to 119,698
_RS00580
ABIE40_RS00585: ABIE40_RS00585 - 4-hydroxy-tetrahydrodipicolinate reductase, at 119,720 to 120,544
_RS00585
ABIE40_RS00590: ABIE40_RS00590 - ABC transporter ATP-binding protein, at 120,563 to 122,344
_RS00590
Position (kb) 119
120 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 118.122 kb on + strand, within ABIE40_RS00570 at 118.232 kb on + strand at 118.232 kb on + strand at 118.233 kb on - strand at 118.233 kb on - strand at 118.233 kb on - strand at 118.233 kb on - strand at 118.233 kb on - strand at 118.233 kb on - strand at 118.233 kb on - strand at 118.233 kb on - strand at 118.233 kb on - strand at 118.238 kb on + strand at 118.238 kb on + strand at 118.335 kb on + strand at 118.438 kb on + strand, within ABIE40_RS00575 at 118.438 kb on + strand, within ABIE40_RS00575 at 118.775 kb on + strand, within ABIE40_RS00575 at 118.776 kb on - strand, within ABIE40_RS00575 at 118.776 kb on - strand, within ABIE40_RS00575 at 118.829 kb on + strand, within ABIE40_RS00575 at 118.829 kb on + strand, within ABIE40_RS00575 at 118.829 kb on + strand, within ABIE40_RS00575 at 118.829 kb on + strand, within ABIE40_RS00575 at 118.829 kb on + strand, within ABIE40_RS00575 at 118.829 kb on + strand, within ABIE40_RS00575 at 118.830 kb on - strand, within ABIE40_RS00575 at 118.830 kb on - strand, within ABIE40_RS00575 at 118.830 kb on - strand, within ABIE40_RS00575 at 118.964 kb on + strand at 118.964 kb on + strand at 118.964 kb on + strand at 118.964 kb on + strand at 119.284 kb on - strand, within ABIE40_RS00580 at 119.362 kb on + strand, within ABIE40_RS00580 at 119.363 kb on - strand, within ABIE40_RS00580 at 119.363 kb on - strand, within ABIE40_RS00580 at 119.427 kb on + strand, within ABIE40_RS00580 at 119.535 kb on + strand, within ABIE40_RS00580 at 119.536 kb on - strand, within ABIE40_RS00580 at 119.721 kb on + strand at 119.722 kb on - strand at 119.726 kb on + strand at 119.726 kb on + strand at 119.727 kb on - strand at 119.727 kb on - strand at 119.727 kb on - strand at 119.727 kb on - strand at 119.746 kb on - strand at 119.758 kb on - strand at 119.837 kb on - strand, within ABIE40_RS00585 at 119.837 kb on - strand, within ABIE40_RS00585 at 119.950 kb on + strand, within ABIE40_RS00585 at 119.950 kb on + strand, within ABIE40_RS00585 at 119.950 kb on + strand, within ABIE40_RS00585 at 119.950 kb on + strand, within ABIE40_RS00585 at 119.951 kb on - strand, within ABIE40_RS00585 at 119.951 kb on - strand, within ABIE40_RS00585 at 119.951 kb on - strand, within ABIE40_RS00585 at 119.951 kb on - strand, within ABIE40_RS00585 at 119.951 kb on - strand, within ABIE40_RS00585 at 119.951 kb on - strand, within ABIE40_RS00585 at 119.951 kb on - strand, within ABIE40_RS00585 at 120.084 kb on - strand, within ABIE40_RS00585 at 120.161 kb on - strand, within ABIE40_RS00585 at 120.161 kb on - strand, within ABIE40_RS00585 at 120.161 kb on - strand, within ABIE40_RS00585 at 120.307 kb on + strand, within ABIE40_RS00585 at 120.530 kb on - strand at 120.530 kb on - strand at 120.553 kb on + strand at 120.572 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Threonine (C) remove 118,122 + ABIE40_RS00570 0.88 +0.1 118,232 + -0.2 118,232 + -0.1 118,233 - -1.0 118,233 - -0.9 118,233 - -0.2 118,233 - +1.5 118,233 - +1.0 118,233 - +0.2 118,233 - -0.7 118,233 - +0.8 118,233 - -0.3 118,238 + -0.4 118,238 + +0.2 118,335 + +1.2 118,438 + ABIE40_RS00575 0.21 -1.0 118,438 + ABIE40_RS00575 0.21 +0.6 118,775 + ABIE40_RS00575 0.67 -0.0 118,776 - ABIE40_RS00575 0.67 -0.2 118,776 - ABIE40_RS00575 0.67 +0.4 118,829 + ABIE40_RS00575 0.74 +0.1 118,829 + ABIE40_RS00575 0.74 +0.0 118,829 + ABIE40_RS00575 0.74 -2.7 118,829 + ABIE40_RS00575 0.74 +0.2 118,829 + ABIE40_RS00575 0.74 +1.8 118,829 + ABIE40_RS00575 0.74 -0.6 118,830 - ABIE40_RS00575 0.75 -0.1 118,830 - ABIE40_RS00575 0.75 -0.7 118,830 - ABIE40_RS00575 0.75 -2.4 118,964 + +0.2 118,964 + -1.4 118,964 + +0.6 118,964 + +0.5 119,284 - ABIE40_RS00580 0.35 -1.4 119,362 + ABIE40_RS00580 0.47 -1.2 119,363 - ABIE40_RS00580 0.47 -1.4 119,363 - ABIE40_RS00580 0.47 -1.9 119,427 + ABIE40_RS00580 0.57 -1.0 119,535 + ABIE40_RS00580 0.74 -1.6 119,536 - ABIE40_RS00580 0.74 +2.8 119,721 + +0.5 119,722 - +0.1 119,726 + -3.5 119,726 + -1.4 119,727 - +0.6 119,727 - -0.5 119,727 - +1.8 119,727 - +0.2 119,746 - -1.7 119,758 - -2.4 119,837 - ABIE40_RS00585 0.14 -1.2 119,837 - ABIE40_RS00585 0.14 -1.7 119,950 + ABIE40_RS00585 0.28 -2.4 119,950 + ABIE40_RS00585 0.28 -1.0 119,950 + ABIE40_RS00585 0.28 -2.7 119,950 + ABIE40_RS00585 0.28 -4.2 119,951 - ABIE40_RS00585 0.28 -0.4 119,951 - ABIE40_RS00585 0.28 -2.3 119,951 - ABIE40_RS00585 0.28 -1.0 119,951 - ABIE40_RS00585 0.28 -1.2 119,951 - ABIE40_RS00585 0.28 -0.8 119,951 - ABIE40_RS00585 0.28 -0.9 119,951 - ABIE40_RS00585 0.28 -1.1 120,084 - ABIE40_RS00585 0.44 -2.3 120,161 - ABIE40_RS00585 0.53 -0.6 120,161 - ABIE40_RS00585 0.53 -0.4 120,161 - ABIE40_RS00585 0.53 -1.4 120,307 + ABIE40_RS00585 0.71 -1.8 120,530 - -1.3 120,530 - -1.2 120,553 + -1.9 120,572 - -2.1
Or see this region's nucleotide sequence