Strain Fitness in Variovorax sp. OAS795 around ABID97_RS29400

Experiment: D-Glucuronic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS29395 and ABID97_RS29400 are separated by 126 nucleotidesABID97_RS29400 and ABID97_RS29405 are separated by 250 nucleotidesABID97_RS29405 and ABID97_RS29410 are separated by 62 nucleotides ABID97_RS29395: ABID97_RS29395 - zinc-dependent alcohol dehydrogenase family protein, at 803,602 to 804,624 _RS29395 ABID97_RS29400: ABID97_RS29400 - acyl-CoA dehydrogenase family protein, at 804,751 to 805,986 _RS29400 ABID97_RS29405: ABID97_RS29405 - hypothetical protein, at 806,237 to 806,647 _RS29405 ABID97_RS29410: ABID97_RS29410 - hypothetical protein, at 806,710 to 807,063 _RS29410 Position (kb) 804 805 806Strain fitness (log2 ratio) -1 0 1at 803.768 kb on - strand, within ABID97_RS29395at 803.768 kb on - strand, within ABID97_RS29395at 804.841 kb on + strandat 806.046 kb on + strandat 806.135 kb on + strandat 806.136 kb on - strandat 806.576 kb on + strand, within ABID97_RS29405at 806.747 kb on - strand, within ABID97_RS29410

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucuronic Acid (C)
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803,768 - ABID97_RS29395 0.16 +0.2
803,768 - ABID97_RS29395 0.16 +0.1
804,841 + +0.4
806,046 + -0.9
806,135 + +0.4
806,136 - -0.7
806,576 + ABID97_RS29405 0.82 -1.2
806,747 - ABID97_RS29410 0.10 -0.3

Or see this region's nucleotide sequence