Experiment: D-Glucuronic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS29120 and ABID97_RS29125 are separated by 13 nucleotides ABID97_RS29125 and ABID97_RS29130 are separated by 100 nucleotides ABID97_RS29130 and ABID97_RS29135 overlap by 95 nucleotides
ABID97_RS29120: ABID97_RS29120 - LysR substrate-binding domain-containing protein, at 743,752 to 744,648
_RS29120
ABID97_RS29125: ABID97_RS29125 - flavin reductase family protein, at 744,662 to 744,955
_RS29125
ABID97_RS29130: ABID97_RS29130 - hypothetical protein, at 745,056 to 745,316
_RS29130
ABID97_RS29135: ABID97_RS29135 - acyl-CoA dehydrogenase family protein, at 745,222 to 746,487
_RS29135
Position (kb) 744
745 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 743.975 kb on + strand, within ABID97_RS29120 at 744.272 kb on - strand, within ABID97_RS29120 at 744.361 kb on + strand, within ABID97_RS29120 at 744.361 kb on + strand, within ABID97_RS29120 at 744.361 kb on + strand, within ABID97_RS29120 at 744.362 kb on - strand, within ABID97_RS29120 at 744.401 kb on - strand, within ABID97_RS29120 at 744.478 kb on + strand, within ABID97_RS29120 at 744.574 kb on + strand at 744.574 kb on + strand at 744.575 kb on - strand at 744.575 kb on - strand at 744.575 kb on - strand at 744.625 kb on + strand at 744.626 kb on - strand at 745.204 kb on + strand, within ABID97_RS29130 at 745.205 kb on - strand, within ABID97_RS29130 at 745.205 kb on - strand, within ABID97_RS29130
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucuronic Acid (C) remove 743,975 + ABID97_RS29120 0.25 -0.7 744,272 - ABID97_RS29120 0.58 -0.7 744,361 + ABID97_RS29120 0.68 -0.3 744,361 + ABID97_RS29120 0.68 +0.1 744,361 + ABID97_RS29120 0.68 -0.2 744,362 - ABID97_RS29120 0.68 -0.1 744,401 - ABID97_RS29120 0.72 +4.2 744,478 + ABID97_RS29120 0.81 -0.6 744,574 + -1.9 744,574 + -0.3 744,575 - -0.1 744,575 - -0.2 744,575 - -0.5 744,625 + -0.4 744,626 - -0.3 745,204 + ABID97_RS29130 0.57 +0.5 745,205 - ABID97_RS29130 0.57 -0.1 745,205 - ABID97_RS29130 0.57 +0.2
Or see this region's nucleotide sequence