Strain Fitness in Variovorax sp. OAS795 around ABID97_RS20145

Experiment: D-Glucuronic Acid (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABID97_RS20135 and ABID97_RS20140 are separated by 96 nucleotidesABID97_RS20140 and ABID97_RS20145 are separated by 93 nucleotidesABID97_RS20145 and ABID97_RS20150 overlap by 11 nucleotides ABID97_RS20135: ABID97_RS20135 - MBL fold metallo-hydrolase, at 4,161,855 to 4,162,631 _RS20135 ABID97_RS20140: ABID97_RS20140 - hypothetical protein, at 4,162,728 to 4,162,997 _RS20140 ABID97_RS20145: ABID97_RS20145 - hypothetical protein, at 4,163,091 to 4,163,606 _RS20145 ABID97_RS20150: ABID97_RS20150 - cupin domain-containing protein, at 4,163,596 to 4,164,738 _RS20150 Position (kb) 4163 4164Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4162.729 kb on + strandat 4162.730 kb on - strandat 4163.093 kb on - strandat 4163.093 kb on - strandat 4163.759 kb on + strand, within ABID97_RS20150at 4163.760 kb on - strand, within ABID97_RS20150at 4163.760 kb on - strand, within ABID97_RS20150at 4163.778 kb on - strand, within ABID97_RS20150at 4164.164 kb on + strand, within ABID97_RS20150at 4164.165 kb on - strand, within ABID97_RS20150at 4164.179 kb on + strand, within ABID97_RS20150at 4164.179 kb on + strand, within ABID97_RS20150at 4164.180 kb on - strand, within ABID97_RS20150at 4164.180 kb on - strand, within ABID97_RS20150at 4164.329 kb on + strand, within ABID97_RS20150at 4164.330 kb on - strand, within ABID97_RS20150at 4164.371 kb on + strand, within ABID97_RS20150at 4164.371 kb on + strand, within ABID97_RS20150at 4164.371 kb on + strand, within ABID97_RS20150at 4164.372 kb on - strand, within ABID97_RS20150

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucuronic Acid (C)
remove
4,162,729 + -2.0
4,162,730 - -0.5
4,163,093 - -0.2
4,163,093 - -1.0
4,163,759 + ABID97_RS20150 0.14 -0.6
4,163,760 - ABID97_RS20150 0.14 -1.0
4,163,760 - ABID97_RS20150 0.14 +0.6
4,163,778 - ABID97_RS20150 0.16 +0.9
4,164,164 + ABID97_RS20150 0.50 +0.2
4,164,165 - ABID97_RS20150 0.50 +0.4
4,164,179 + ABID97_RS20150 0.51 +0.6
4,164,179 + ABID97_RS20150 0.51 +0.2
4,164,180 - ABID97_RS20150 0.51 +3.0
4,164,180 - ABID97_RS20150 0.51 +1.5
4,164,329 + ABID97_RS20150 0.64 +0.5
4,164,330 - ABID97_RS20150 0.64 +0.5
4,164,371 + ABID97_RS20150 0.68 +0.2
4,164,371 + ABID97_RS20150 0.68 +0.5
4,164,371 + ABID97_RS20150 0.68 -0.4
4,164,372 - ABID97_RS20150 0.68 -0.2

Or see this region's nucleotide sequence