Strain Fitness in Variovorax sp. OAS795 around ABID97_RS19120

Experiment: D-Glucuronic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS19115 and ABID97_RS19120 are separated by 64 nucleotidesABID97_RS19120 and ABID97_RS19125 overlap by 4 nucleotidesABID97_RS19125 and ABID97_RS19130 are separated by 71 nucleotides ABID97_RS19115: ABID97_RS19115 - polysaccharide biosynthesis/export family protein, at 3,944,087 to 3,945,280 _RS19115 ABID97_RS19120: ABID97_RS19120 - polysaccharide biosynthesis tyrosine autokinase, at 3,945,345 to 3,947,633 _RS19120 ABID97_RS19125: ABID97_RS19125 - sugar transferase, at 3,947,630 to 3,948,292 _RS19125 ABID97_RS19130: ABID97_RS19130 - GDP-L-fucose synthase, at 3,948,364 to 3,949,341 _RS19130 Position (kb) 3945 3946 3947 3948Strain fitness (log2 ratio) -2 -1 0 1at 3944.834 kb on + strand, within ABID97_RS19115at 3944.835 kb on - strand, within ABID97_RS19115at 3944.942 kb on + strand, within ABID97_RS19115at 3944.943 kb on - strand, within ABID97_RS19115at 3945.313 kb on - strandat 3945.345 kb on - strandat 3945.714 kb on + strand, within ABID97_RS19120at 3945.792 kb on + strand, within ABID97_RS19120at 3946.578 kb on + strand, within ABID97_RS19120at 3946.824 kb on + strand, within ABID97_RS19120at 3947.320 kb on - strand, within ABID97_RS19120at 3947.850 kb on - strand, within ABID97_RS19125at 3947.940 kb on - strand, within ABID97_RS19125at 3947.940 kb on - strand, within ABID97_RS19125at 3947.940 kb on - strand, within ABID97_RS19125at 3947.940 kb on - strand, within ABID97_RS19125at 3948.093 kb on - strand, within ABID97_RS19125at 3948.363 kb on + strandat 3948.373 kb on + strandat 3948.377 kb on + strandat 3948.378 kb on - strandat 3948.575 kb on - strand, within ABID97_RS19130

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucuronic Acid (C)
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3,944,834 + ABID97_RS19115 0.63 +0.4
3,944,835 - ABID97_RS19115 0.63 +1.5
3,944,942 + ABID97_RS19115 0.72 -1.8
3,944,943 - ABID97_RS19115 0.72 +0.5
3,945,313 - +1.1
3,945,345 - +1.2
3,945,714 + ABID97_RS19120 0.16 +1.0
3,945,792 + ABID97_RS19120 0.20 +0.3
3,946,578 + ABID97_RS19120 0.54 +1.3
3,946,824 + ABID97_RS19120 0.65 +1.2
3,947,320 - ABID97_RS19120 0.86 +1.0
3,947,850 - ABID97_RS19125 0.33 +1.7
3,947,940 - ABID97_RS19125 0.47 +0.6
3,947,940 - ABID97_RS19125 0.47 +1.1
3,947,940 - ABID97_RS19125 0.47 +1.2
3,947,940 - ABID97_RS19125 0.47 +0.9
3,948,093 - ABID97_RS19125 0.70 +0.8
3,948,363 + +0.2
3,948,373 + -0.1
3,948,377 + -0.5
3,948,378 - -1.3
3,948,575 - ABID97_RS19130 0.22 -1.8

Or see this region's nucleotide sequence