Experiment: D-Glucuronic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS19115 and ABID97_RS19120 are separated by 64 nucleotides ABID97_RS19120 and ABID97_RS19125 overlap by 4 nucleotides ABID97_RS19125 and ABID97_RS19130 are separated by 71 nucleotides
ABID97_RS19115: ABID97_RS19115 - polysaccharide biosynthesis/export family protein, at 3,944,087 to 3,945,280
_RS19115
ABID97_RS19120: ABID97_RS19120 - polysaccharide biosynthesis tyrosine autokinase, at 3,945,345 to 3,947,633
_RS19120
ABID97_RS19125: ABID97_RS19125 - sugar transferase, at 3,947,630 to 3,948,292
_RS19125
ABID97_RS19130: ABID97_RS19130 - GDP-L-fucose synthase, at 3,948,364 to 3,949,341
_RS19130
Position (kb)
3945
3946
3947
3948 Strain fitness (log2 ratio)
-2
-1
0
1 at 3944.834 kb on + strand, within ABID97_RS19115 at 3944.835 kb on - strand, within ABID97_RS19115 at 3944.942 kb on + strand, within ABID97_RS19115 at 3944.943 kb on - strand, within ABID97_RS19115 at 3945.313 kb on - strand at 3945.345 kb on - strand at 3945.714 kb on + strand, within ABID97_RS19120 at 3945.792 kb on + strand, within ABID97_RS19120 at 3946.578 kb on + strand, within ABID97_RS19120 at 3946.824 kb on + strand, within ABID97_RS19120 at 3947.320 kb on - strand, within ABID97_RS19120 at 3947.850 kb on - strand, within ABID97_RS19125 at 3947.940 kb on - strand, within ABID97_RS19125 at 3947.940 kb on - strand, within ABID97_RS19125 at 3947.940 kb on - strand, within ABID97_RS19125 at 3947.940 kb on - strand, within ABID97_RS19125 at 3948.093 kb on - strand, within ABID97_RS19125 at 3948.363 kb on + strand at 3948.373 kb on + strand at 3948.377 kb on + strand at 3948.378 kb on - strand at 3948.575 kb on - strand, within ABID97_RS19130
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucuronic Acid (C) remove 3,944,834 + ABID97_RS19115 0.63 +0.4 3,944,835 - ABID97_RS19115 0.63 +1.5 3,944,942 + ABID97_RS19115 0.72 -1.8 3,944,943 - ABID97_RS19115 0.72 +0.5 3,945,313 - +1.1 3,945,345 - +1.2 3,945,714 + ABID97_RS19120 0.16 +1.0 3,945,792 + ABID97_RS19120 0.20 +0.3 3,946,578 + ABID97_RS19120 0.54 +1.3 3,946,824 + ABID97_RS19120 0.65 +1.2 3,947,320 - ABID97_RS19120 0.86 +1.0 3,947,850 - ABID97_RS19125 0.33 +1.7 3,947,940 - ABID97_RS19125 0.47 +0.6 3,947,940 - ABID97_RS19125 0.47 +1.1 3,947,940 - ABID97_RS19125 0.47 +1.2 3,947,940 - ABID97_RS19125 0.47 +0.9 3,948,093 - ABID97_RS19125 0.70 +0.8 3,948,363 + +0.2 3,948,373 + -0.1 3,948,377 + -0.5 3,948,378 - -1.3 3,948,575 - ABID97_RS19130 0.22 -1.8
Or see this region's nucleotide sequence