Experiment: D-Glucuronic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS19095 and ABID97_RS19100 are separated by 6 nucleotides ABID97_RS19100 and ABID97_RS19105 overlap by 4 nucleotides ABID97_RS19105 and ABID97_RS19110 overlap by 8 nucleotides ABID97_RS19110 and ABID97_RS19115 are separated by 32 nucleotides
ABID97_RS19095: ABID97_RS19095 - condensation domain-containing protein, at 3,938,967 to 3,941,564
_RS19095
ABID97_RS19100: ABID97_RS19100 - 4'-phosphopantetheinyl transferase superfamily protein, at 3,941,571 to 3,942,290
_RS19100
ABID97_RS19105: ABID97_RS19105 - alpha/beta hydrolase, at 3,942,287 to 3,943,105
_RS19105
ABID97_RS19110: ABID97_RS19110 - hypothetical protein, at 3,943,098 to 3,944,054
_RS19110
ABID97_RS19115: ABID97_RS19115 - polysaccharide biosynthesis/export family protein, at 3,944,087 to 3,945,280
_RS19115
Position (kb) 3942
3943
3944 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 3941.400 kb on + strand at 3943.899 kb on + strand, within ABID97_RS19110 at 3943.900 kb on - strand, within ABID97_RS19110 at 3943.900 kb on - strand, within ABID97_RS19110 at 3944.040 kb on + strand at 3944.069 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucuronic Acid (C) remove 3,941,400 + +4.2 3,943,899 + ABID97_RS19110 0.84 +2.7 3,943,900 - ABID97_RS19110 0.84 +3.2 3,943,900 - ABID97_RS19110 0.84 +4.5 3,944,040 + +0.8 3,944,069 - +0.6
Or see this region's nucleotide sequence