Experiment: D-Glucuronic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS14400 and ABID97_RS14405 are separated by 22 nucleotides ABID97_RS14405 and ABID97_RS14410 are separated by 29 nucleotides ABID97_RS14410 and ABID97_RS14415 are separated by 77 nucleotides
ABID97_RS14400: ABID97_RS14400 - YgiQ family radical SAM protein, at 2,990,353 to 2,992,728
_RS14400
ABID97_RS14405: ABID97_RS14405 - tautomerase family protein, at 2,992,751 to 2,993,134
_RS14405
ABID97_RS14410: ABID97_RS14410 - cold shock and DUF1294 domain-containing protein, at 2,993,164 to 2,993,838
_RS14410
ABID97_RS14415: ABID97_RS14415 - hypothetical protein, at 2,993,916 to 2,994,836
_RS14415
Position (kb)
2992
2993
2994 Strain fitness (log2 ratio)
-1
0
1
2 at 2991.808 kb on + strand, within ABID97_RS14400 at 2991.808 kb on + strand, within ABID97_RS14400 at 2991.809 kb on - strand, within ABID97_RS14400 at 2991.922 kb on + strand, within ABID97_RS14400 at 2991.923 kb on - strand, within ABID97_RS14400 at 2991.923 kb on - strand, within ABID97_RS14400 at 2992.009 kb on + strand, within ABID97_RS14400 at 2992.010 kb on - strand, within ABID97_RS14400 at 2992.117 kb on + strand, within ABID97_RS14400 at 2992.118 kb on - strand, within ABID97_RS14400 at 2992.174 kb on + strand, within ABID97_RS14400 at 2992.174 kb on + strand, within ABID97_RS14400 at 2992.174 kb on + strand, within ABID97_RS14400 at 2992.288 kb on + strand, within ABID97_RS14400 at 2992.289 kb on - strand, within ABID97_RS14400 at 2992.322 kb on - strand, within ABID97_RS14400 at 2992.549 kb on + strand at 2992.550 kb on - strand at 2992.878 kb on + strand, within ABID97_RS14405 at 2992.879 kb on - strand, within ABID97_RS14405 at 2992.951 kb on - strand, within ABID97_RS14405 at 2992.951 kb on - strand, within ABID97_RS14405 at 2992.951 kb on - strand, within ABID97_RS14405 at 2992.965 kb on + strand, within ABID97_RS14405 at 2992.965 kb on + strand, within ABID97_RS14405 at 2992.966 kb on - strand, within ABID97_RS14405 at 2992.966 kb on - strand, within ABID97_RS14405 at 2992.966 kb on - strand, within ABID97_RS14405 at 2993.061 kb on + strand, within ABID97_RS14405 at 2993.062 kb on - strand, within ABID97_RS14405 at 2993.062 kb on - strand, within ABID97_RS14405 at 2993.062 kb on - strand, within ABID97_RS14405 at 2993.250 kb on - strand, within ABID97_RS14410 at 2993.250 kb on - strand, within ABID97_RS14410 at 2993.402 kb on + strand, within ABID97_RS14410 at 2993.600 kb on - strand, within ABID97_RS14410 at 2993.815 kb on + strand at 2993.902 kb on + strand at 2993.903 kb on - strand at 2993.903 kb on - strand at 2993.903 kb on - strand at 2993.903 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucuronic Acid (C) remove 2,991,808 + ABID97_RS14400 0.61 -0.1 2,991,808 + ABID97_RS14400 0.61 -0.5 2,991,809 - ABID97_RS14400 0.61 +0.1 2,991,922 + ABID97_RS14400 0.66 -1.1 2,991,923 - ABID97_RS14400 0.66 +0.9 2,991,923 - ABID97_RS14400 0.66 -0.3 2,992,009 + ABID97_RS14400 0.70 +0.6 2,992,010 - ABID97_RS14400 0.70 -0.4 2,992,117 + ABID97_RS14400 0.74 -0.1 2,992,118 - ABID97_RS14400 0.74 +0.1 2,992,174 + ABID97_RS14400 0.77 -0.0 2,992,174 + ABID97_RS14400 0.77 -0.8 2,992,174 + ABID97_RS14400 0.77 -1.0 2,992,288 + ABID97_RS14400 0.81 +0.5 2,992,289 - ABID97_RS14400 0.81 -0.0 2,992,322 - ABID97_RS14400 0.83 +0.8 2,992,549 + +0.2 2,992,550 - +1.0 2,992,878 + ABID97_RS14405 0.33 -0.6 2,992,879 - ABID97_RS14405 0.33 +0.6 2,992,951 - ABID97_RS14405 0.52 +0.9 2,992,951 - ABID97_RS14405 0.52 -0.1 2,992,951 - ABID97_RS14405 0.52 +0.3 2,992,965 + ABID97_RS14405 0.56 -0.3 2,992,965 + ABID97_RS14405 0.56 +0.9 2,992,966 - ABID97_RS14405 0.56 +0.4 2,992,966 - ABID97_RS14405 0.56 +0.3 2,992,966 - ABID97_RS14405 0.56 +0.5 2,993,061 + ABID97_RS14405 0.81 -0.5 2,993,062 - ABID97_RS14405 0.81 -0.1 2,993,062 - ABID97_RS14405 0.81 -0.3 2,993,062 - ABID97_RS14405 0.81 -0.3 2,993,250 - ABID97_RS14410 0.13 -0.1 2,993,250 - ABID97_RS14410 0.13 -0.5 2,993,402 + ABID97_RS14410 0.35 +0.5 2,993,600 - ABID97_RS14410 0.65 -0.6 2,993,815 + +0.3 2,993,902 + +1.9 2,993,903 - +0.2 2,993,903 - -0.5 2,993,903 - +0.9 2,993,903 - +0.0
Or see this region's nucleotide sequence