Strain Fitness in Variovorax sp. OAS795 around ABID97_RS14405

Experiment: D-Glucuronic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS14400 and ABID97_RS14405 are separated by 22 nucleotidesABID97_RS14405 and ABID97_RS14410 are separated by 29 nucleotidesABID97_RS14410 and ABID97_RS14415 are separated by 77 nucleotides ABID97_RS14400: ABID97_RS14400 - YgiQ family radical SAM protein, at 2,990,353 to 2,992,728 _RS14400 ABID97_RS14405: ABID97_RS14405 - tautomerase family protein, at 2,992,751 to 2,993,134 _RS14405 ABID97_RS14410: ABID97_RS14410 - cold shock and DUF1294 domain-containing protein, at 2,993,164 to 2,993,838 _RS14410 ABID97_RS14415: ABID97_RS14415 - hypothetical protein, at 2,993,916 to 2,994,836 _RS14415 Position (kb) 2992 2993 2994Strain fitness (log2 ratio) -1 0 1 2at 2991.808 kb on + strand, within ABID97_RS14400at 2991.808 kb on + strand, within ABID97_RS14400at 2991.809 kb on - strand, within ABID97_RS14400at 2991.922 kb on + strand, within ABID97_RS14400at 2991.923 kb on - strand, within ABID97_RS14400at 2991.923 kb on - strand, within ABID97_RS14400at 2992.009 kb on + strand, within ABID97_RS14400at 2992.010 kb on - strand, within ABID97_RS14400at 2992.117 kb on + strand, within ABID97_RS14400at 2992.118 kb on - strand, within ABID97_RS14400at 2992.174 kb on + strand, within ABID97_RS14400at 2992.174 kb on + strand, within ABID97_RS14400at 2992.174 kb on + strand, within ABID97_RS14400at 2992.288 kb on + strand, within ABID97_RS14400at 2992.289 kb on - strand, within ABID97_RS14400at 2992.322 kb on - strand, within ABID97_RS14400at 2992.549 kb on + strandat 2992.550 kb on - strandat 2992.878 kb on + strand, within ABID97_RS14405at 2992.879 kb on - strand, within ABID97_RS14405at 2992.951 kb on - strand, within ABID97_RS14405at 2992.951 kb on - strand, within ABID97_RS14405at 2992.951 kb on - strand, within ABID97_RS14405at 2992.965 kb on + strand, within ABID97_RS14405at 2992.965 kb on + strand, within ABID97_RS14405at 2992.966 kb on - strand, within ABID97_RS14405at 2992.966 kb on - strand, within ABID97_RS14405at 2992.966 kb on - strand, within ABID97_RS14405at 2993.061 kb on + strand, within ABID97_RS14405at 2993.062 kb on - strand, within ABID97_RS14405at 2993.062 kb on - strand, within ABID97_RS14405at 2993.062 kb on - strand, within ABID97_RS14405at 2993.250 kb on - strand, within ABID97_RS14410at 2993.250 kb on - strand, within ABID97_RS14410at 2993.402 kb on + strand, within ABID97_RS14410at 2993.600 kb on - strand, within ABID97_RS14410at 2993.815 kb on + strandat 2993.902 kb on + strandat 2993.903 kb on - strandat 2993.903 kb on - strandat 2993.903 kb on - strandat 2993.903 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucuronic Acid (C)
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2,991,808 + ABID97_RS14400 0.61 -0.1
2,991,808 + ABID97_RS14400 0.61 -0.5
2,991,809 - ABID97_RS14400 0.61 +0.1
2,991,922 + ABID97_RS14400 0.66 -1.1
2,991,923 - ABID97_RS14400 0.66 +0.9
2,991,923 - ABID97_RS14400 0.66 -0.3
2,992,009 + ABID97_RS14400 0.70 +0.6
2,992,010 - ABID97_RS14400 0.70 -0.4
2,992,117 + ABID97_RS14400 0.74 -0.1
2,992,118 - ABID97_RS14400 0.74 +0.1
2,992,174 + ABID97_RS14400 0.77 -0.0
2,992,174 + ABID97_RS14400 0.77 -0.8
2,992,174 + ABID97_RS14400 0.77 -1.0
2,992,288 + ABID97_RS14400 0.81 +0.5
2,992,289 - ABID97_RS14400 0.81 -0.0
2,992,322 - ABID97_RS14400 0.83 +0.8
2,992,549 + +0.2
2,992,550 - +1.0
2,992,878 + ABID97_RS14405 0.33 -0.6
2,992,879 - ABID97_RS14405 0.33 +0.6
2,992,951 - ABID97_RS14405 0.52 +0.9
2,992,951 - ABID97_RS14405 0.52 -0.1
2,992,951 - ABID97_RS14405 0.52 +0.3
2,992,965 + ABID97_RS14405 0.56 -0.3
2,992,965 + ABID97_RS14405 0.56 +0.9
2,992,966 - ABID97_RS14405 0.56 +0.4
2,992,966 - ABID97_RS14405 0.56 +0.3
2,992,966 - ABID97_RS14405 0.56 +0.5
2,993,061 + ABID97_RS14405 0.81 -0.5
2,993,062 - ABID97_RS14405 0.81 -0.1
2,993,062 - ABID97_RS14405 0.81 -0.3
2,993,062 - ABID97_RS14405 0.81 -0.3
2,993,250 - ABID97_RS14410 0.13 -0.1
2,993,250 - ABID97_RS14410 0.13 -0.5
2,993,402 + ABID97_RS14410 0.35 +0.5
2,993,600 - ABID97_RS14410 0.65 -0.6
2,993,815 + +0.3
2,993,902 + +1.9
2,993,903 - +0.2
2,993,903 - -0.5
2,993,903 - +0.9
2,993,903 - +0.0

Or see this region's nucleotide sequence