Experiment: D-Glucuronic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS11855 and ABID97_RS11860 are separated by 52 nucleotides ABID97_RS11860 and ABID97_RS11865 overlap by 82 nucleotides ABID97_RS11865 and ABID97_RS11870 overlap by 4 nucleotides
ABID97_RS11855: ABID97_RS11855 - UDP-glucose/GDP-mannose dehydrogenase family protein, at 2,447,885 to 2,449,270
_RS11855
ABID97_RS11860: ABID97_RS11860 - UDP-glucuronic acid decarboxylase family protein, at 2,449,323 to 2,450,372
_RS11860
ABID97_RS11865: ABID97_RS11865 - beta-xylosidase, at 2,450,291 to 2,451,247
_RS11865
ABID97_RS11870: ABID97_RS11870 - inositol-3-phosphate synthase, at 2,451,244 to 2,452,395
_RS11870
Position (kb)
2449
2450
2451 Strain fitness (log2 ratio)
-1
0
1 at 2448.492 kb on - strand, within ABID97_RS11855 at 2449.077 kb on - strand, within ABID97_RS11855 at 2449.077 kb on - strand, within ABID97_RS11855 at 2449.323 kb on - strand at 2449.548 kb on + strand, within ABID97_RS11860 at 2449.696 kb on - strand, within ABID97_RS11860 at 2449.863 kb on + strand, within ABID97_RS11860 at 2449.947 kb on + strand, within ABID97_RS11860 at 2450.742 kb on + strand, within ABID97_RS11865 at 2450.746 kb on - strand, within ABID97_RS11865 at 2450.880 kb on - strand, within ABID97_RS11865
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucuronic Acid (C) remove 2,448,492 - ABID97_RS11855 0.44 -0.2 2,449,077 - ABID97_RS11855 0.86 -0.4 2,449,077 - ABID97_RS11855 0.86 +1.3 2,449,323 - -0.7 2,449,548 + ABID97_RS11860 0.21 -0.4 2,449,696 - ABID97_RS11860 0.36 +1.2 2,449,863 + ABID97_RS11860 0.51 -0.2 2,449,947 + ABID97_RS11860 0.59 +0.4 2,450,742 + ABID97_RS11865 0.47 -0.6 2,450,746 - ABID97_RS11865 0.48 +0.5 2,450,880 - ABID97_RS11865 0.62 -0.4
Or see this region's nucleotide sequence