Strain Fitness in Variovorax sp. OAS795 around ABID97_RS09430

Experiment: D-Glucuronic Acid (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABID97_RS09425 and ABID97_RS09430 are separated by 22 nucleotidesABID97_RS09430 and ABID97_RS09435 overlap by 4 nucleotidesABID97_RS09435 and ABID97_RS09440 overlap by 4 nucleotidesABID97_RS09440 and ABID97_RS09445 overlap by 4 nucleotides ABID97_RS09425: ABID97_RS09425 - XdhC family protein, at 1,981,226 to 1,982,248 _RS09425 ABID97_RS09430: ABID97_RS09430 - monovalent cation/H(+) antiporter subunit G, at 1,982,271 to 1,982,630 _RS09430 ABID97_RS09435: ABID97_RS09435 - K+/H+ antiporter subunit F, at 1,982,627 to 1,982,905 _RS09435 ABID97_RS09440: ABID97_RS09440 - Na+/H+ antiporter subunit E, at 1,982,902 to 1,983,393 _RS09440 ABID97_RS09445: ABID97_RS09445 - monovalent cation/H+ antiporter subunit D, at 1,983,390 to 1,985,096 _RS09445 Position (kb) 1982 1983Strain fitness (log2 ratio) -2 -1 0 1 2at 1981.770 kb on - strand, within ABID97_RS09425at 1981.997 kb on + strand, within ABID97_RS09425at 1982.111 kb on + strand, within ABID97_RS09425at 1982.112 kb on - strand, within ABID97_RS09425at 1982.112 kb on - strand, within ABID97_RS09425at 1982.434 kb on + strand, within ABID97_RS09430at 1982.574 kb on + strand, within ABID97_RS09430at 1982.734 kb on - strand, within ABID97_RS09435at 1982.775 kb on + strand, within ABID97_RS09435at 1982.775 kb on + strand, within ABID97_RS09435

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucuronic Acid (C)
remove
1,981,770 - ABID97_RS09425 0.53 -0.3
1,981,997 + ABID97_RS09425 0.75 +2.3
1,982,111 + ABID97_RS09425 0.87 +0.1
1,982,112 - ABID97_RS09425 0.87 -0.5
1,982,112 - ABID97_RS09425 0.87 -0.5
1,982,434 + ABID97_RS09430 0.45 -2.7
1,982,574 + ABID97_RS09430 0.84 +1.0
1,982,734 - ABID97_RS09435 0.38 -0.7
1,982,775 + ABID97_RS09435 0.53 -0.2
1,982,775 + ABID97_RS09435 0.53 -0.9

Or see this region's nucleotide sequence