Strain Fitness in Variovorax sp. OAS795 around ABID97_RS08960

Experiment: D-Glucuronic Acid (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABID97_RS08955 and ABID97_RS08960 are separated by 129 nucleotidesABID97_RS08960 and ABID97_RS08965 are separated by 128 nucleotides ABID97_RS08955: ABID97_RS08955 - type VI secretion system contractile sheath large subunit, at 1,876,544 to 1,878,040 _RS08955 ABID97_RS08960: ABID97_RS08960 - type VI secretion system tube protein Hcp, at 1,878,170 to 1,878,655 _RS08960 ABID97_RS08965: ABID97_RS08965 - type VI secretion system baseplate subunit TssK, at 1,878,784 to 1,880,139 _RS08965 Position (kb) 1878 1879Strain fitness (log2 ratio) -1 0 1at 1877.390 kb on + strand, within ABID97_RS08955at 1877.390 kb on + strand, within ABID97_RS08955at 1877.495 kb on - strand, within ABID97_RS08955at 1877.667 kb on - strand, within ABID97_RS08955at 1877.716 kb on + strand, within ABID97_RS08955at 1877.939 kb on + strandat 1878.169 kb on + strandat 1878.383 kb on + strand, within ABID97_RS08960at 1878.907 kb on + strandat 1879.332 kb on - strand, within ABID97_RS08965at 1879.599 kb on + strand, within ABID97_RS08965

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucuronic Acid (C)
remove
1,877,390 + ABID97_RS08955 0.57 +0.5
1,877,390 + ABID97_RS08955 0.57 +1.3
1,877,495 - ABID97_RS08955 0.64 -0.0
1,877,667 - ABID97_RS08955 0.75 -0.2
1,877,716 + ABID97_RS08955 0.78 -1.2
1,877,939 + -0.6
1,878,169 + +0.4
1,878,383 + ABID97_RS08960 0.44 -0.0
1,878,907 + -0.2
1,879,332 - ABID97_RS08965 0.40 +0.1
1,879,599 + ABID97_RS08965 0.60 -0.4

Or see this region's nucleotide sequence