Experiment: D-Glucuronic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS03380 and ABID97_RS03385 are separated by 116 nucleotides ABID97_RS03385 and ABID97_RS03390 are separated by 88 nucleotides
ABID97_RS03380: ABID97_RS03380 - threonine ammonia-lyase, at 683,131 to 684,355
_RS03380
ABID97_RS03385: ABID97_RS03385 - AAA family ATPase, at 684,472 to 686,796
_RS03385
ABID97_RS03390: ABID97_RS03390 - S41 family peptidase, at 686,885 to 688,492
_RS03390
Position (kb) 684
685
686
687 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 683.898 kb on + strand, within ABID97_RS03380 at 683.899 kb on - strand, within ABID97_RS03380 at 683.899 kb on - strand, within ABID97_RS03380 at 684.082 kb on - strand, within ABID97_RS03380 at 684.432 kb on + strand at 684.432 kb on + strand at 684.433 kb on - strand at 684.805 kb on + strand, within ABID97_RS03385 at 684.806 kb on - strand, within ABID97_RS03385 at 684.830 kb on - strand, within ABID97_RS03385 at 684.830 kb on - strand, within ABID97_RS03385 at 684.830 kb on - strand, within ABID97_RS03385 at 684.830 kb on - strand, within ABID97_RS03385 at 684.841 kb on + strand, within ABID97_RS03385 at 684.841 kb on + strand, within ABID97_RS03385 at 684.841 kb on + strand, within ABID97_RS03385 at 684.842 kb on - strand, within ABID97_RS03385 at 684.842 kb on - strand, within ABID97_RS03385 at 684.995 kb on + strand, within ABID97_RS03385 at 684.995 kb on + strand, within ABID97_RS03385 at 684.995 kb on + strand, within ABID97_RS03385 at 684.996 kb on - strand, within ABID97_RS03385 at 684.996 kb on - strand, within ABID97_RS03385 at 684.996 kb on - strand, within ABID97_RS03385 at 684.996 kb on - strand, within ABID97_RS03385 at 684.996 kb on - strand, within ABID97_RS03385 at 685.000 kb on + strand, within ABID97_RS03385 at 685.078 kb on + strand, within ABID97_RS03385 at 685.079 kb on - strand, within ABID97_RS03385 at 685.079 kb on - strand, within ABID97_RS03385 at 685.079 kb on - strand, within ABID97_RS03385 at 685.502 kb on - strand, within ABID97_RS03385 at 685.810 kb on + strand, within ABID97_RS03385 at 685.811 kb on - strand, within ABID97_RS03385 at 685.811 kb on - strand, within ABID97_RS03385 at 685.811 kb on - strand, within ABID97_RS03385 at 686.086 kb on + strand, within ABID97_RS03385 at 686.086 kb on + strand, within ABID97_RS03385 at 686.086 kb on + strand, within ABID97_RS03385 at 686.086 kb on + strand, within ABID97_RS03385 at 686.087 kb on - strand, within ABID97_RS03385 at 686.179 kb on + strand, within ABID97_RS03385 at 686.179 kb on + strand, within ABID97_RS03385 at 686.180 kb on - strand, within ABID97_RS03385 at 686.180 kb on - strand, within ABID97_RS03385 at 686.281 kb on + strand, within ABID97_RS03385 at 686.281 kb on + strand, within ABID97_RS03385 at 686.281 kb on + strand, within ABID97_RS03385 at 686.282 kb on - strand, within ABID97_RS03385 at 686.282 kb on - strand, within ABID97_RS03385 at 686.282 kb on - strand, within ABID97_RS03385 at 686.282 kb on - strand, within ABID97_RS03385 at 686.282 kb on - strand, within ABID97_RS03385 at 686.282 kb on - strand, within ABID97_RS03385 at 686.404 kb on + strand, within ABID97_RS03385 at 686.405 kb on - strand, within ABID97_RS03385 at 686.405 kb on - strand, within ABID97_RS03385 at 686.405 kb on - strand, within ABID97_RS03385 at 686.672 kb on + strand at 686.672 kb on + strand at 686.795 kb on - strand at 686.795 kb on - strand at 686.795 kb on - strand at 687.236 kb on + strand, within ABID97_RS03390 at 687.236 kb on + strand, within ABID97_RS03390 at 687.236 kb on + strand, within ABID97_RS03390 at 687.236 kb on + strand, within ABID97_RS03390 at 687.236 kb on + strand, within ABID97_RS03390 at 687.237 kb on - strand, within ABID97_RS03390 at 687.237 kb on - strand, within ABID97_RS03390 at 687.237 kb on - strand, within ABID97_RS03390 at 687.299 kb on + strand, within ABID97_RS03390 at 687.300 kb on - strand, within ABID97_RS03390 at 687.300 kb on - strand, within ABID97_RS03390 at 687.300 kb on - strand, within ABID97_RS03390 at 687.362 kb on + strand, within ABID97_RS03390 at 687.362 kb on + strand, within ABID97_RS03390 at 687.362 kb on + strand, within ABID97_RS03390 at 687.362 kb on + strand, within ABID97_RS03390 at 687.362 kb on + strand, within ABID97_RS03390 at 687.363 kb on - strand, within ABID97_RS03390 at 687.363 kb on - strand, within ABID97_RS03390 at 687.363 kb on - strand, within ABID97_RS03390 at 687.363 kb on - strand, within ABID97_RS03390 at 687.363 kb on - strand, within ABID97_RS03390 at 687.363 kb on - strand, within ABID97_RS03390 at 687.368 kb on + strand, within ABID97_RS03390 at 687.369 kb on - strand, within ABID97_RS03390 at 687.369 kb on - strand, within ABID97_RS03390 at 687.369 kb on - strand, within ABID97_RS03390 at 687.369 kb on - strand, within ABID97_RS03390 at 687.369 kb on - strand, within ABID97_RS03390 at 687.369 kb on - strand, within ABID97_RS03390 at 687.420 kb on - strand, within ABID97_RS03390
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucuronic Acid (C) remove 683,898 + ABID97_RS03380 0.63 +0.4 683,899 - ABID97_RS03380 0.63 +0.1 683,899 - ABID97_RS03380 0.63 +1.2 684,082 - ABID97_RS03380 0.78 +0.1 684,432 + +0.0 684,432 + -0.4 684,433 - -0.6 684,805 + ABID97_RS03385 0.14 -2.0 684,806 - ABID97_RS03385 0.14 +0.2 684,830 - ABID97_RS03385 0.15 -1.3 684,830 - ABID97_RS03385 0.15 -1.3 684,830 - ABID97_RS03385 0.15 -0.9 684,830 - ABID97_RS03385 0.15 -1.4 684,841 + ABID97_RS03385 0.16 +0.4 684,841 + ABID97_RS03385 0.16 -1.9 684,841 + ABID97_RS03385 0.16 +0.1 684,842 - ABID97_RS03385 0.16 -2.0 684,842 - ABID97_RS03385 0.16 -2.7 684,995 + ABID97_RS03385 0.22 -1.2 684,995 + ABID97_RS03385 0.22 -0.6 684,995 + ABID97_RS03385 0.22 -1.6 684,996 - ABID97_RS03385 0.23 -2.5 684,996 - ABID97_RS03385 0.23 -2.7 684,996 - ABID97_RS03385 0.23 -1.3 684,996 - ABID97_RS03385 0.23 -1.3 684,996 - ABID97_RS03385 0.23 -1.9 685,000 + ABID97_RS03385 0.23 -0.8 685,078 + ABID97_RS03385 0.26 -1.8 685,079 - ABID97_RS03385 0.26 -0.4 685,079 - ABID97_RS03385 0.26 -2.5 685,079 - ABID97_RS03385 0.26 -1.6 685,502 - ABID97_RS03385 0.44 +0.7 685,810 + ABID97_RS03385 0.58 -0.2 685,811 - ABID97_RS03385 0.58 +0.0 685,811 - ABID97_RS03385 0.58 -2.9 685,811 - ABID97_RS03385 0.58 -1.6 686,086 + ABID97_RS03385 0.69 -1.9 686,086 + ABID97_RS03385 0.69 -2.0 686,086 + ABID97_RS03385 0.69 -1.5 686,086 + ABID97_RS03385 0.69 -1.7 686,087 - ABID97_RS03385 0.69 -0.9 686,179 + ABID97_RS03385 0.73 -0.5 686,179 + ABID97_RS03385 0.73 -1.3 686,180 - ABID97_RS03385 0.73 -1.5 686,180 - ABID97_RS03385 0.73 -0.1 686,281 + ABID97_RS03385 0.78 -1.9 686,281 + ABID97_RS03385 0.78 -1.9 686,281 + ABID97_RS03385 0.78 -1.4 686,282 - ABID97_RS03385 0.78 -1.6 686,282 - ABID97_RS03385 0.78 -0.4 686,282 - ABID97_RS03385 0.78 -1.2 686,282 - ABID97_RS03385 0.78 -1.7 686,282 - ABID97_RS03385 0.78 -1.8 686,282 - ABID97_RS03385 0.78 -1.1 686,404 + ABID97_RS03385 0.83 +0.1 686,405 - ABID97_RS03385 0.83 -0.6 686,405 - ABID97_RS03385 0.83 -2.4 686,405 - ABID97_RS03385 0.83 -1.9 686,672 + -0.6 686,672 + -1.0 686,795 - +2.1 686,795 - +0.1 686,795 - +0.4 687,236 + ABID97_RS03390 0.22 -0.6 687,236 + ABID97_RS03390 0.22 -0.0 687,236 + ABID97_RS03390 0.22 +0.7 687,236 + ABID97_RS03390 0.22 +0.9 687,236 + ABID97_RS03390 0.22 -0.0 687,237 - ABID97_RS03390 0.22 -1.2 687,237 - ABID97_RS03390 0.22 +0.3 687,237 - ABID97_RS03390 0.22 -1.0 687,299 + ABID97_RS03390 0.26 -0.6 687,300 - ABID97_RS03390 0.26 +0.7 687,300 - ABID97_RS03390 0.26 +0.1 687,300 - ABID97_RS03390 0.26 +4.3 687,362 + ABID97_RS03390 0.30 -0.2 687,362 + ABID97_RS03390 0.30 +1.7 687,362 + ABID97_RS03390 0.30 -0.1 687,362 + ABID97_RS03390 0.30 -0.5 687,362 + ABID97_RS03390 0.30 +0.6 687,363 - ABID97_RS03390 0.30 +0.6 687,363 - ABID97_RS03390 0.30 +0.5 687,363 - ABID97_RS03390 0.30 +1.5 687,363 - ABID97_RS03390 0.30 +0.7 687,363 - ABID97_RS03390 0.30 -1.1 687,363 - ABID97_RS03390 0.30 +0.0 687,368 + ABID97_RS03390 0.30 +0.7 687,369 - ABID97_RS03390 0.30 +0.8 687,369 - ABID97_RS03390 0.30 -0.3 687,369 - ABID97_RS03390 0.30 +0.2 687,369 - ABID97_RS03390 0.30 -0.0 687,369 - ABID97_RS03390 0.30 -0.5 687,369 - ABID97_RS03390 0.30 +0.1 687,420 - ABID97_RS03390 0.33 -0.9
Or see this region's nucleotide sequence