Experiment: D-Glucuronic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS03320 and ABID97_RS03325 are separated by 27 nucleotides ABID97_RS03325 and ABID97_RS03330 overlap by 4 nucleotides ABID97_RS03330 and ABID97_RS03335 overlap by 4 nucleotides ABID97_RS03335 and ABID97_RS03340 are separated by 41 nucleotides
ABID97_RS03320: ABID97_RS03320 - tripartite tricarboxylate transporter substrate binding protein, at 669,534 to 670,526
_RS03320
ABID97_RS03325: ABID97_RS03325 - SDR family oxidoreductase, at 670,554 to 671,474
_RS03325
ABID97_RS03330: ABID97_RS03330 - AMP-binding protein, at 671,471 to 674,383
_RS03330
ABID97_RS03335: ABID97_RS03335 - TetR/AcrR family transcriptional regulator, at 674,380 to 675,090
_RS03335
ABID97_RS03340: ABID97_RS03340 - nucleoside recognition domain-containing protein, at 675,132 to 676,361
_RS03340
Position (kb) 671
672
673
674
675 Strain fitness (log2 ratio) -2
-1
0
1
2 at 670.524 kb on + strand at 670.525 kb on - strand at 670.920 kb on + strand, within ABID97_RS03325 at 670.920 kb on + strand, within ABID97_RS03325 at 670.921 kb on - strand, within ABID97_RS03325 at 670.921 kb on - strand, within ABID97_RS03325 at 670.921 kb on - strand, within ABID97_RS03325 at 670.921 kb on - strand, within ABID97_RS03325 at 670.921 kb on - strand, within ABID97_RS03325 at 670.921 kb on - strand, within ABID97_RS03325 at 670.921 kb on - strand, within ABID97_RS03325 at 670.921 kb on - strand, within ABID97_RS03325 at 670.923 kb on + strand, within ABID97_RS03325 at 670.923 kb on + strand, within ABID97_RS03325 at 670.923 kb on + strand, within ABID97_RS03325 at 670.923 kb on + strand, within ABID97_RS03325 at 670.923 kb on + strand, within ABID97_RS03325 at 670.924 kb on - strand, within ABID97_RS03325 at 671.562 kb on - strand at 671.784 kb on - strand, within ABID97_RS03330 at 671.939 kb on + strand, within ABID97_RS03330 at 671.939 kb on + strand, within ABID97_RS03330 at 671.939 kb on + strand, within ABID97_RS03330 at 671.940 kb on - strand, within ABID97_RS03330 at 672.218 kb on + strand, within ABID97_RS03330 at 672.219 kb on - strand, within ABID97_RS03330 at 672.287 kb on + strand, within ABID97_RS03330 at 672.288 kb on - strand, within ABID97_RS03330 at 672.288 kb on - strand, within ABID97_RS03330 at 672.548 kb on + strand, within ABID97_RS03330 at 672.549 kb on - strand, within ABID97_RS03330 at 672.869 kb on + strand, within ABID97_RS03330 at 672.869 kb on + strand, within ABID97_RS03330 at 672.869 kb on + strand, within ABID97_RS03330 at 672.870 kb on - strand, within ABID97_RS03330 at 672.870 kb on - strand, within ABID97_RS03330 at 673.074 kb on - strand, within ABID97_RS03330 at 673.106 kb on + strand, within ABID97_RS03330 at 673.151 kb on + strand, within ABID97_RS03330 at 673.427 kb on + strand, within ABID97_RS03330 at 673.427 kb on + strand, within ABID97_RS03330 at 673.428 kb on - strand, within ABID97_RS03330 at 673.428 kb on - strand, within ABID97_RS03330 at 673.428 kb on - strand, within ABID97_RS03330 at 673.629 kb on - strand, within ABID97_RS03330 at 673.863 kb on - strand, within ABID97_RS03330 at 674.180 kb on + strand at 674.180 kb on + strand at 674.181 kb on - strand at 674.249 kb on + strand at 674.250 kb on - strand at 674.250 kb on - strand at 674.381 kb on + strand at 674.382 kb on - strand at 674.566 kb on - strand, within ABID97_RS03335 at 674.672 kb on + strand, within ABID97_RS03335 at 674.672 kb on + strand, within ABID97_RS03335 at 674.673 kb on - strand, within ABID97_RS03335 at 674.673 kb on - strand, within ABID97_RS03335 at 674.981 kb on + strand, within ABID97_RS03335 at 674.981 kb on + strand, within ABID97_RS03335 at 674.982 kb on - strand, within ABID97_RS03335 at 675.148 kb on + strand at 675.149 kb on - strand at 675.149 kb on - strand at 675.244 kb on + strand at 675.259 kb on + strand, within ABID97_RS03340 at 675.259 kb on + strand, within ABID97_RS03340 at 675.260 kb on - strand, within ABID97_RS03340 at 675.260 kb on - strand, within ABID97_RS03340 at 675.260 kb on - strand, within ABID97_RS03340 at 675.260 kb on - strand, within ABID97_RS03340
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucuronic Acid (C) remove 670,524 + -0.0 670,525 - -0.0 670,920 + ABID97_RS03325 0.40 -1.9 670,920 + ABID97_RS03325 0.40 +1.5 670,921 - ABID97_RS03325 0.40 +0.5 670,921 - ABID97_RS03325 0.40 -0.1 670,921 - ABID97_RS03325 0.40 +0.2 670,921 - ABID97_RS03325 0.40 +0.0 670,921 - ABID97_RS03325 0.40 -0.1 670,921 - ABID97_RS03325 0.40 -0.6 670,921 - ABID97_RS03325 0.40 +0.1 670,921 - ABID97_RS03325 0.40 -1.0 670,923 + ABID97_RS03325 0.40 +1.7 670,923 + ABID97_RS03325 0.40 +0.9 670,923 + ABID97_RS03325 0.40 +0.1 670,923 + ABID97_RS03325 0.40 -0.3 670,923 + ABID97_RS03325 0.40 +0.5 670,924 - ABID97_RS03325 0.40 +0.1 671,562 - +0.7 671,784 - ABID97_RS03330 0.11 +1.8 671,939 + ABID97_RS03330 0.16 +1.7 671,939 + ABID97_RS03330 0.16 -0.9 671,939 + ABID97_RS03330 0.16 +0.5 671,940 - ABID97_RS03330 0.16 -0.1 672,218 + ABID97_RS03330 0.26 -0.1 672,219 - ABID97_RS03330 0.26 -0.8 672,287 + ABID97_RS03330 0.28 +0.6 672,288 - ABID97_RS03330 0.28 +0.6 672,288 - ABID97_RS03330 0.28 +0.1 672,548 + ABID97_RS03330 0.37 -0.1 672,549 - ABID97_RS03330 0.37 +0.1 672,869 + ABID97_RS03330 0.48 -1.6 672,869 + ABID97_RS03330 0.48 +0.0 672,869 + ABID97_RS03330 0.48 -0.1 672,870 - ABID97_RS03330 0.48 +0.0 672,870 - ABID97_RS03330 0.48 -0.5 673,074 - ABID97_RS03330 0.55 -0.2 673,106 + ABID97_RS03330 0.56 +0.0 673,151 + ABID97_RS03330 0.58 +0.2 673,427 + ABID97_RS03330 0.67 -0.1 673,427 + ABID97_RS03330 0.67 +0.1 673,428 - ABID97_RS03330 0.67 +0.2 673,428 - ABID97_RS03330 0.67 -0.6 673,428 - ABID97_RS03330 0.67 -0.1 673,629 - ABID97_RS03330 0.74 +0.0 673,863 - ABID97_RS03330 0.82 +0.3 674,180 + -0.9 674,180 + -1.1 674,181 - +0.3 674,249 + +1.0 674,250 - -0.3 674,250 - +0.4 674,381 + -0.2 674,382 - -0.4 674,566 - ABID97_RS03335 0.26 +1.4 674,672 + ABID97_RS03335 0.41 -0.8 674,672 + ABID97_RS03335 0.41 +0.3 674,673 - ABID97_RS03335 0.41 -0.5 674,673 - ABID97_RS03335 0.41 -0.4 674,981 + ABID97_RS03335 0.85 -0.2 674,981 + ABID97_RS03335 0.85 -0.5 674,982 - ABID97_RS03335 0.85 -0.7 675,148 + +1.2 675,149 - -0.1 675,149 - +1.1 675,244 + +0.5 675,259 + ABID97_RS03340 0.10 -0.2 675,259 + ABID97_RS03340 0.10 -0.3 675,260 - ABID97_RS03340 0.10 -0.8 675,260 - ABID97_RS03340 0.10 -0.8 675,260 - ABID97_RS03340 0.10 +0.3 675,260 - ABID97_RS03340 0.10 -0.6
Or see this region's nucleotide sequence