Experiment: D-Glucuronic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS01920 and ABID97_RS01925 overlap by 4 nucleotides ABID97_RS01925 and ABID97_RS01930 are separated by 18 nucleotides ABID97_RS01930 and ABID97_RS01935 are separated by 225 nucleotides
ABID97_RS01920: ABID97_RS01920 - amidohydrolase family protein, at 379,300 to 380,496
_RS01920
ABID97_RS01925: ABID97_RS01925 - 2-oxo-tetronate isomerase, at 380,493 to 381,311
_RS01925
ABID97_RS01930: ABID97_RS01930 - aldolase, at 381,330 to 381,995
_RS01930
ABID97_RS01935: ABID97_RS01935 - 3-oxo-tetronate kinase, at 382,221 to 383,492
_RS01935
Position (kb) 380
381
382 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 379.547 kb on + strand, within ABID97_RS01920 at 379.562 kb on + strand, within ABID97_RS01920 at 379.562 kb on + strand, within ABID97_RS01920 at 379.562 kb on + strand, within ABID97_RS01920 at 379.562 kb on + strand, within ABID97_RS01920 at 379.563 kb on - strand, within ABID97_RS01920 at 379.563 kb on - strand, within ABID97_RS01920 at 379.680 kb on - strand, within ABID97_RS01920 at 379.680 kb on - strand, within ABID97_RS01920 at 380.309 kb on + strand, within ABID97_RS01920 at 380.309 kb on + strand, within ABID97_RS01920 at 380.310 kb on - strand, within ABID97_RS01920 at 380.639 kb on - strand, within ABID97_RS01925 at 380.644 kb on + strand, within ABID97_RS01925 at 380.644 kb on + strand, within ABID97_RS01925 at 380.645 kb on - strand, within ABID97_RS01925 at 380.725 kb on + strand, within ABID97_RS01925 at 380.726 kb on - strand, within ABID97_RS01925 at 380.773 kb on + strand, within ABID97_RS01925 at 380.773 kb on + strand, within ABID97_RS01925 at 380.774 kb on - strand, within ABID97_RS01925 at 380.774 kb on - strand, within ABID97_RS01925 at 380.774 kb on - strand, within ABID97_RS01925 at 381.034 kb on + strand, within ABID97_RS01925 at 381.035 kb on - strand, within ABID97_RS01925 at 381.035 kb on - strand, within ABID97_RS01925 at 381.211 kb on + strand, within ABID97_RS01925 at 381.211 kb on + strand, within ABID97_RS01925 at 381.211 kb on + strand, within ABID97_RS01925 at 381.211 kb on + strand, within ABID97_RS01925 at 381.212 kb on - strand, within ABID97_RS01925 at 381.212 kb on - strand, within ABID97_RS01925 at 381.278 kb on - strand at 381.322 kb on + strand at 381.634 kb on + strand, within ABID97_RS01930 at 381.635 kb on - strand, within ABID97_RS01930 at 381.754 kb on + strand, within ABID97_RS01930 at 381.754 kb on + strand, within ABID97_RS01930 at 381.755 kb on - strand, within ABID97_RS01930 at 381.869 kb on + strand, within ABID97_RS01930 at 381.870 kb on - strand, within ABID97_RS01930 at 381.900 kb on + strand, within ABID97_RS01930 at 381.900 kb on + strand, within ABID97_RS01930 at 381.901 kb on - strand, within ABID97_RS01930 at 382.125 kb on + strand at 382.235 kb on + strand at 382.235 kb on + strand at 382.235 kb on + strand at 382.235 kb on + strand at 382.235 kb on + strand at 382.235 kb on + strand at 382.236 kb on - strand at 382.236 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucuronic Acid (C) remove 379,547 + ABID97_RS01920 0.21 -0.7 379,562 + ABID97_RS01920 0.22 -0.5 379,562 + ABID97_RS01920 0.22 -0.1 379,562 + ABID97_RS01920 0.22 -0.3 379,562 + ABID97_RS01920 0.22 +0.7 379,563 - ABID97_RS01920 0.22 -0.9 379,563 - ABID97_RS01920 0.22 -1.0 379,680 - ABID97_RS01920 0.32 -1.0 379,680 - ABID97_RS01920 0.32 -0.2 380,309 + ABID97_RS01920 0.84 -0.3 380,309 + ABID97_RS01920 0.84 -0.1 380,310 - ABID97_RS01920 0.84 +0.4 380,639 - ABID97_RS01925 0.18 -1.4 380,644 + ABID97_RS01925 0.18 +0.4 380,644 + ABID97_RS01925 0.18 +1.0 380,645 - ABID97_RS01925 0.19 -0.8 380,725 + ABID97_RS01925 0.28 -0.8 380,726 - ABID97_RS01925 0.28 -2.1 380,773 + ABID97_RS01925 0.34 -2.4 380,773 + ABID97_RS01925 0.34 +1.4 380,774 - ABID97_RS01925 0.34 -3.8 380,774 - ABID97_RS01925 0.34 -1.3 380,774 - ABID97_RS01925 0.34 -1.9 381,034 + ABID97_RS01925 0.66 -2.0 381,035 - ABID97_RS01925 0.66 -0.6 381,035 - ABID97_RS01925 0.66 -1.0 381,211 + ABID97_RS01925 0.88 -1.4 381,211 + ABID97_RS01925 0.88 -2.3 381,211 + ABID97_RS01925 0.88 -0.6 381,211 + ABID97_RS01925 0.88 -1.3 381,212 - ABID97_RS01925 0.88 -1.8 381,212 - ABID97_RS01925 0.88 -1.5 381,278 - -1.7 381,322 + -0.2 381,634 + ABID97_RS01930 0.46 -0.3 381,635 - ABID97_RS01930 0.46 +1.1 381,754 + ABID97_RS01930 0.64 +0.4 381,754 + ABID97_RS01930 0.64 +0.1 381,755 - ABID97_RS01930 0.64 -0.7 381,869 + ABID97_RS01930 0.81 +0.3 381,870 - ABID97_RS01930 0.81 -0.8 381,900 + ABID97_RS01930 0.86 -1.5 381,900 + ABID97_RS01930 0.86 -1.2 381,901 - ABID97_RS01930 0.86 -2.8 382,125 + -0.6 382,235 + -0.3 382,235 + -0.4 382,235 + -0.1 382,235 + +0.4 382,235 + -0.5 382,235 + +0.2 382,236 - +0.1 382,236 - +0.2
Or see this region's nucleotide sequence