Experiment: D-Glucuronic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS00740 and ABID97_RS00745 are separated by 51 nucleotides ABID97_RS00745 and ABID97_RS00750 are separated by 73 nucleotides ABID97_RS00750 and ABID97_RS00755 are separated by 13 nucleotides ABID97_RS00755 and ABID97_RS00760 are separated by 7 nucleotides
ABID97_RS00740: ABID97_RS00740 - dienelactone hydrolase family protein, at 147,344 to 148,027
_RS00740
ABID97_RS00745: ABID97_RS00745 - 2-hydroxychromene-2-carboxylate isomerase, at 148,079 to 148,684
_RS00745
ABID97_RS00750: ABID97_RS00750 - SDR family oxidoreductase, at 148,758 to 149,504
_RS00750
ABID97_RS00755: ABID97_RS00755 - MarC family protein, at 149,518 to 150,159
_RS00755
ABID97_RS00760: ABID97_RS00760 - EVE domain-containing protein, at 150,167 to 150,628
_RS00760
Position (kb) 148
149
150 Strain fitness (log2 ratio) -2
-1
0
1
2 at 147.807 kb on + strand, within ABID97_RS00740 at 147.807 kb on + strand, within ABID97_RS00740 at 147.865 kb on - strand, within ABID97_RS00740 at 147.865 kb on - strand, within ABID97_RS00740 at 147.880 kb on - strand, within ABID97_RS00740 at 147.975 kb on + strand at 147.975 kb on + strand at 147.976 kb on - strand at 147.976 kb on - strand at 147.976 kb on - strand at 148.136 kb on + strand at 148.137 kb on - strand at 148.137 kb on - strand at 148.155 kb on + strand, within ABID97_RS00745 at 148.155 kb on + strand, within ABID97_RS00745 at 148.155 kb on + strand, within ABID97_RS00745 at 148.155 kb on + strand, within ABID97_RS00745 at 148.155 kb on + strand, within ABID97_RS00745 at 148.155 kb on + strand, within ABID97_RS00745 at 148.156 kb on - strand, within ABID97_RS00745 at 148.156 kb on - strand, within ABID97_RS00745 at 148.156 kb on - strand, within ABID97_RS00745 at 148.156 kb on - strand, within ABID97_RS00745 at 148.156 kb on - strand, within ABID97_RS00745 at 148.200 kb on + strand, within ABID97_RS00745 at 148.200 kb on + strand, within ABID97_RS00745 at 148.201 kb on - strand, within ABID97_RS00745 at 148.201 kb on - strand, within ABID97_RS00745 at 148.209 kb on + strand, within ABID97_RS00745 at 148.635 kb on + strand at 148.635 kb on + strand at 148.635 kb on + strand at 148.662 kb on + strand at 148.662 kb on + strand at 148.663 kb on - strand at 148.663 kb on - strand at 148.663 kb on - strand at 148.663 kb on - strand at 148.663 kb on - strand at 148.704 kb on + strand at 148.704 kb on + strand at 148.704 kb on + strand at 148.705 kb on - strand at 148.705 kb on - strand at 148.705 kb on - strand at 148.705 kb on - strand at 148.705 kb on - strand at 148.724 kb on - strand at 148.768 kb on + strand at 148.768 kb on + strand at 148.855 kb on - strand, within ABID97_RS00750 at 148.855 kb on - strand, within ABID97_RS00750 at 149.177 kb on + strand, within ABID97_RS00750 at 149.178 kb on - strand, within ABID97_RS00750 at 149.217 kb on + strand, within ABID97_RS00750 at 149.218 kb on - strand, within ABID97_RS00750 at 149.463 kb on + strand at 149.464 kb on - strand at 149.464 kb on - strand at 149.464 kb on - strand at 149.502 kb on + strand at 149.511 kb on + strand at 149.594 kb on - strand, within ABID97_RS00755 at 149.605 kb on + strand, within ABID97_RS00755 at 149.924 kb on - strand, within ABID97_RS00755 at 149.924 kb on - strand, within ABID97_RS00755 at 150.369 kb on + strand, within ABID97_RS00760 at 150.372 kb on + strand, within ABID97_RS00760 at 150.373 kb on - strand, within ABID97_RS00760 at 150.468 kb on + strand, within ABID97_RS00760 at 150.468 kb on + strand, within ABID97_RS00760 at 150.469 kb on - strand, within ABID97_RS00760
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucuronic Acid (C) remove 147,807 + ABID97_RS00740 0.68 -0.5 147,807 + ABID97_RS00740 0.68 -0.2 147,865 - ABID97_RS00740 0.76 +0.0 147,865 - ABID97_RS00740 0.76 -0.6 147,880 - ABID97_RS00740 0.78 +0.1 147,975 + +1.7 147,975 + -1.0 147,976 - -0.9 147,976 - -0.0 147,976 - -0.0 148,136 + +0.4 148,137 - -0.3 148,137 - +0.2 148,155 + ABID97_RS00745 0.13 +0.2 148,155 + ABID97_RS00745 0.13 -0.6 148,155 + ABID97_RS00745 0.13 -1.3 148,155 + ABID97_RS00745 0.13 -0.0 148,155 + ABID97_RS00745 0.13 -0.8 148,155 + ABID97_RS00745 0.13 -1.2 148,156 - ABID97_RS00745 0.13 -0.6 148,156 - ABID97_RS00745 0.13 -0.6 148,156 - ABID97_RS00745 0.13 +0.0 148,156 - ABID97_RS00745 0.13 -0.5 148,156 - ABID97_RS00745 0.13 -0.1 148,200 + ABID97_RS00745 0.20 +0.1 148,200 + ABID97_RS00745 0.20 +0.2 148,201 - ABID97_RS00745 0.20 -0.3 148,201 - ABID97_RS00745 0.20 -0.1 148,209 + ABID97_RS00745 0.21 -0.8 148,635 + -1.0 148,635 + -0.3 148,635 + +0.3 148,662 + -0.7 148,662 + +0.1 148,663 - +2.3 148,663 - +1.1 148,663 - +1.7 148,663 - -0.9 148,663 - -0.4 148,704 + -0.4 148,704 + +0.2 148,704 + -0.6 148,705 - +0.1 148,705 - -0.3 148,705 - -0.5 148,705 - +0.0 148,705 - -0.4 148,724 - -0.9 148,768 + -0.9 148,768 + -0.8 148,855 - ABID97_RS00750 0.13 +0.2 148,855 - ABID97_RS00750 0.13 +0.1 149,177 + ABID97_RS00750 0.56 +0.3 149,178 - ABID97_RS00750 0.56 +0.6 149,217 + ABID97_RS00750 0.61 -0.2 149,218 - ABID97_RS00750 0.62 -0.8 149,463 + +0.1 149,464 - -1.2 149,464 - +0.1 149,464 - -0.4 149,502 + +0.1 149,511 + -0.4 149,594 - ABID97_RS00755 0.12 -0.7 149,605 + ABID97_RS00755 0.14 -0.8 149,924 - ABID97_RS00755 0.63 +0.3 149,924 - ABID97_RS00755 0.63 +0.1 150,369 + ABID97_RS00760 0.44 -2.7 150,372 + ABID97_RS00760 0.44 -0.9 150,373 - ABID97_RS00760 0.45 -1.1 150,468 + ABID97_RS00760 0.65 +0.1 150,468 + ABID97_RS00760 0.65 -0.6 150,469 - ABID97_RS00760 0.65 +0.3
Or see this region's nucleotide sequence