Strain Fitness in Variovorax sp. OAS795 around ABID97_RS00540

Experiment: D-Glucuronic Acid (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABID97_RS00535 and ABID97_RS00540 are separated by 106 nucleotidesABID97_RS00540 and ABID97_RS00545 overlap by 4 nucleotidesABID97_RS00545 and ABID97_RS00550 are separated by 109 nucleotides ABID97_RS00535: ABID97_RS00535 - NADP-dependent oxidoreductase, at 115,296 to 116,339 _RS00535 ABID97_RS00540: ABID97_RS00540 - HAMP domain-containing sensor histidine kinase, at 116,446 to 117,840 _RS00540 ABID97_RS00545: ABID97_RS00545 - response regulator transcription factor, at 117,837 to 118,538 _RS00545 ABID97_RS00550: ABID97_RS00550 - DUF4260 domain-containing protein, at 118,648 to 119,028 _RS00550 Position (kb) 116 117 118Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 115.522 kb on + strand, within ABID97_RS00535at 115.522 kb on + strand, within ABID97_RS00535at 115.522 kb on + strand, within ABID97_RS00535at 115.564 kb on + strand, within ABID97_RS00535at 115.565 kb on - strand, within ABID97_RS00535at 115.565 kb on - strand, within ABID97_RS00535at 115.657 kb on + strand, within ABID97_RS00535at 115.657 kb on + strand, within ABID97_RS00535at 115.657 kb on + strand, within ABID97_RS00535at 115.657 kb on + strand, within ABID97_RS00535at 115.723 kb on + strand, within ABID97_RS00535at 115.723 kb on + strand, within ABID97_RS00535at 115.723 kb on + strand, within ABID97_RS00535at 115.724 kb on - strand, within ABID97_RS00535at 115.724 kb on - strand, within ABID97_RS00535at 115.916 kb on - strand, within ABID97_RS00535at 115.916 kb on - strand, within ABID97_RS00535at 116.029 kb on + strand, within ABID97_RS00535at 116.029 kb on + strand, within ABID97_RS00535at 116.029 kb on + strand, within ABID97_RS00535at 116.029 kb on + strand, within ABID97_RS00535at 116.029 kb on + strand, within ABID97_RS00535at 116.030 kb on - strand, within ABID97_RS00535at 116.030 kb on - strand, within ABID97_RS00535at 116.030 kb on - strand, within ABID97_RS00535at 116.030 kb on - strand, within ABID97_RS00535at 116.030 kb on - strand, within ABID97_RS00535at 116.030 kb on - strand, within ABID97_RS00535at 116.030 kb on - strand, within ABID97_RS00535at 116.030 kb on - strand, within ABID97_RS00535at 116.030 kb on - strand, within ABID97_RS00535at 116.030 kb on - strand, within ABID97_RS00535at 116.030 kb on - strand, within ABID97_RS00535at 116.054 kb on - strand, within ABID97_RS00535at 116.054 kb on - strand, within ABID97_RS00535at 116.054 kb on - strand, within ABID97_RS00535at 116.074 kb on - strand, within ABID97_RS00535at 116.074 kb on - strand, within ABID97_RS00535at 116.074 kb on - strand, within ABID97_RS00535at 116.152 kb on + strand, within ABID97_RS00535at 116.152 kb on + strand, within ABID97_RS00535at 116.152 kb on + strand, within ABID97_RS00535at 116.152 kb on + strand, within ABID97_RS00535at 116.153 kb on - strand, within ABID97_RS00535at 116.153 kb on - strand, within ABID97_RS00535at 116.153 kb on - strand, within ABID97_RS00535at 116.153 kb on - strand, within ABID97_RS00535at 116.153 kb on - strand, within ABID97_RS00535at 116.153 kb on - strand, within ABID97_RS00535at 116.447 kb on + strandat 116.447 kb on + strandat 116.447 kb on + strandat 116.447 kb on + strandat 116.447 kb on + strandat 116.447 kb on + strandat 116.448 kb on - strandat 116.448 kb on - strandat 116.448 kb on - strandat 116.448 kb on - strandat 116.448 kb on - strandat 116.534 kb on + strandat 116.534 kb on + strandat 116.534 kb on + strandat 116.534 kb on + strandat 116.534 kb on + strandat 116.534 kb on + strandat 116.534 kb on + strandat 116.534 kb on + strandat 116.535 kb on - strandat 116.535 kb on - strandat 116.535 kb on - strandat 116.535 kb on - strandat 116.535 kb on - strandat 116.535 kb on - strandat 116.535 kb on - strandat 116.535 kb on - strandat 116.535 kb on - strandat 116.535 kb on - strandat 116.588 kb on + strand, within ABID97_RS00540at 116.589 kb on - strand, within ABID97_RS00540at 116.589 kb on - strand, within ABID97_RS00540at 116.648 kb on - strand, within ABID97_RS00540at 116.648 kb on - strand, within ABID97_RS00540at 116.778 kb on + strand, within ABID97_RS00540at 116.778 kb on + strand, within ABID97_RS00540at 116.778 kb on + strand, within ABID97_RS00540at 117.260 kb on + strand, within ABID97_RS00540at 117.260 kb on + strand, within ABID97_RS00540at 117.260 kb on + strand, within ABID97_RS00540at 117.261 kb on - strand, within ABID97_RS00540at 117.266 kb on + strand, within ABID97_RS00540at 117.267 kb on - strand, within ABID97_RS00540at 117.267 kb on - strand, within ABID97_RS00540at 117.584 kb on + strand, within ABID97_RS00540at 117.585 kb on - strand, within ABID97_RS00540at 117.585 kb on - strand, within ABID97_RS00540at 117.585 kb on - strand, within ABID97_RS00540at 117.871 kb on + strandat 117.958 kb on + strand, within ABID97_RS00545at 117.958 kb on + strand, within ABID97_RS00545at 117.958 kb on + strand, within ABID97_RS00545at 117.959 kb on - strand, within ABID97_RS00545at 117.959 kb on - strand, within ABID97_RS00545at 118.246 kb on + strand, within ABID97_RS00545at 118.246 kb on + strand, within ABID97_RS00545at 118.246 kb on + strand, within ABID97_RS00545at 118.246 kb on + strand, within ABID97_RS00545at 118.246 kb on + strand, within ABID97_RS00545at 118.246 kb on + strand, within ABID97_RS00545at 118.247 kb on - strand, within ABID97_RS00545at 118.247 kb on - strand, within ABID97_RS00545at 118.247 kb on - strand, within ABID97_RS00545at 118.247 kb on - strand, within ABID97_RS00545at 118.247 kb on - strand, within ABID97_RS00545at 118.480 kb on + strandat 118.480 kb on + strandat 118.480 kb on + strandat 118.480 kb on + strandat 118.481 kb on - strandat 118.481 kb on - strandat 118.481 kb on - strandat 118.481 kb on - strandat 118.706 kb on + strand, within ABID97_RS00550at 118.706 kb on + strand, within ABID97_RS00550at 118.707 kb on - strand, within ABID97_RS00550at 118.829 kb on + strand, within ABID97_RS00550

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucuronic Acid (C)
remove
115,522 + ABID97_RS00535 0.22 +0.7
115,522 + ABID97_RS00535 0.22 -0.4
115,522 + ABID97_RS00535 0.22 -0.1
115,564 + ABID97_RS00535 0.26 -0.2
115,565 - ABID97_RS00535 0.26 -0.7
115,565 - ABID97_RS00535 0.26 -0.4
115,657 + ABID97_RS00535 0.35 -0.1
115,657 + ABID97_RS00535 0.35 -0.3
115,657 + ABID97_RS00535 0.35 -0.3
115,657 + ABID97_RS00535 0.35 -0.8
115,723 + ABID97_RS00535 0.41 +0.1
115,723 + ABID97_RS00535 0.41 -0.5
115,723 + ABID97_RS00535 0.41 -0.8
115,724 - ABID97_RS00535 0.41 -0.6
115,724 - ABID97_RS00535 0.41 +0.0
115,916 - ABID97_RS00535 0.59 -0.1
115,916 - ABID97_RS00535 0.59 +0.6
116,029 + ABID97_RS00535 0.70 -1.3
116,029 + ABID97_RS00535 0.70 -0.1
116,029 + ABID97_RS00535 0.70 +0.2
116,029 + ABID97_RS00535 0.70 -1.4
116,029 + ABID97_RS00535 0.70 +0.4
116,030 - ABID97_RS00535 0.70 -0.1
116,030 - ABID97_RS00535 0.70 -0.4
116,030 - ABID97_RS00535 0.70 +0.4
116,030 - ABID97_RS00535 0.70 +0.5
116,030 - ABID97_RS00535 0.70 -0.6
116,030 - ABID97_RS00535 0.70 +0.1
116,030 - ABID97_RS00535 0.70 -0.6
116,030 - ABID97_RS00535 0.70 -1.1
116,030 - ABID97_RS00535 0.70 +1.9
116,030 - ABID97_RS00535 0.70 +0.2
116,030 - ABID97_RS00535 0.70 -0.6
116,054 - ABID97_RS00535 0.73 -1.0
116,054 - ABID97_RS00535 0.73 -0.2
116,054 - ABID97_RS00535 0.73 -1.7
116,074 - ABID97_RS00535 0.75 -0.7
116,074 - ABID97_RS00535 0.75 +0.5
116,074 - ABID97_RS00535 0.75 +0.2
116,152 + ABID97_RS00535 0.82 -0.4
116,152 + ABID97_RS00535 0.82 -0.4
116,152 + ABID97_RS00535 0.82 -0.4
116,152 + ABID97_RS00535 0.82 -0.3
116,153 - ABID97_RS00535 0.82 +0.1
116,153 - ABID97_RS00535 0.82 -0.8
116,153 - ABID97_RS00535 0.82 +0.1
116,153 - ABID97_RS00535 0.82 -0.3
116,153 - ABID97_RS00535 0.82 -2.1
116,153 - ABID97_RS00535 0.82 -0.1
116,447 + +0.0
116,447 + +0.1
116,447 + +0.5
116,447 + -0.9
116,447 + +0.0
116,447 + +0.0
116,448 - -1.4
116,448 - -0.5
116,448 - -0.0
116,448 - +1.3
116,448 - -0.5
116,534 + -1.5
116,534 + -1.2
116,534 + -2.4
116,534 + -2.4
116,534 + -2.5
116,534 + +1.2
116,534 + -1.6
116,534 + -2.3
116,535 - -3.1
116,535 - -4.2
116,535 - -2.7
116,535 - -2.9
116,535 - -1.5
116,535 - -2.5
116,535 - -1.7
116,535 - -0.8
116,535 - -0.0
116,535 - -1.4
116,588 + ABID97_RS00540 0.10 -1.6
116,589 - ABID97_RS00540 0.10 -4.2
116,589 - ABID97_RS00540 0.10 -2.0
116,648 - ABID97_RS00540 0.14 -0.8
116,648 - ABID97_RS00540 0.14 +0.4
116,778 + ABID97_RS00540 0.24 -2.9
116,778 + ABID97_RS00540 0.24 -1.0
116,778 + ABID97_RS00540 0.24 -0.7
117,260 + ABID97_RS00540 0.58 +0.7
117,260 + ABID97_RS00540 0.58 -1.4
117,260 + ABID97_RS00540 0.58 -2.4
117,261 - ABID97_RS00540 0.58 -0.9
117,266 + ABID97_RS00540 0.59 -2.3
117,267 - ABID97_RS00540 0.59 -2.5
117,267 - ABID97_RS00540 0.59 -2.4
117,584 + ABID97_RS00540 0.82 -3.5
117,585 - ABID97_RS00540 0.82 -2.3
117,585 - ABID97_RS00540 0.82 -3.5
117,585 - ABID97_RS00540 0.82 -0.5
117,871 + -0.2
117,958 + ABID97_RS00545 0.17 +0.1
117,958 + ABID97_RS00545 0.17 -0.6
117,958 + ABID97_RS00545 0.17 +0.1
117,959 - ABID97_RS00545 0.17 -0.1
117,959 - ABID97_RS00545 0.17 -0.3
118,246 + ABID97_RS00545 0.58 -0.1
118,246 + ABID97_RS00545 0.58 -0.1
118,246 + ABID97_RS00545 0.58 +0.3
118,246 + ABID97_RS00545 0.58 -0.0
118,246 + ABID97_RS00545 0.58 +0.8
118,246 + ABID97_RS00545 0.58 +1.9
118,247 - ABID97_RS00545 0.58 +0.1
118,247 - ABID97_RS00545 0.58 -1.0
118,247 - ABID97_RS00545 0.58 +1.0
118,247 - ABID97_RS00545 0.58 +0.7
118,247 - ABID97_RS00545 0.58 +0.4
118,480 + -0.6
118,480 + +0.1
118,480 + -0.6
118,480 + -0.7
118,481 - +0.6
118,481 - -0.2
118,481 - -0.4
118,481 - -0.8
118,706 + ABID97_RS00550 0.15 -1.3
118,706 + ABID97_RS00550 0.15 +0.0
118,707 - ABID97_RS00550 0.15 -0.6
118,829 + ABID97_RS00550 0.48 +0.1

Or see this region's nucleotide sequence