Strain Fitness in Escherichia coli BW25113 around b2551

Experiment: D-Serine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyphH and glyA are separated by 197 nucleotidesglyA and hmp are separated by 327 nucleotides b2550: yphH - putative NAGC-like transcriptional regulator (VIMSS), at 2,680,885 to 2,682,078 yphH b2551: glyA - serine hydroxymethyltransferase (NCBI), at 2,682,276 to 2,683,529 glyA b2552: hmp - fused nitric oxide dioxygenase/dihydropteridine reductase 2 (NCBI), at 2,683,857 to 2,685,047 hmp Position (kb) 2682 2683 2684Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2681.316 kb on - strand, within yphHat 2681.433 kb on + strand, within yphHat 2681.433 kb on + strand, within yphHat 2681.440 kb on + strand, within yphHat 2681.612 kb on - strand, within yphHat 2681.629 kb on + strand, within yphHat 2681.726 kb on - strand, within yphHat 2681.771 kb on - strand, within yphHat 2681.938 kb on - strand, within yphHat 2681.938 kb on - strand, within yphHat 2682.052 kb on - strandat 2682.121 kb on - strandat 2683.781 kb on + strandat 2683.789 kb on - strandat 2683.874 kb on - strandat 2684.075 kb on + strand, within hmpat 2684.075 kb on + strand, within hmpat 2684.076 kb on - strand, within hmpat 2684.076 kb on - strand, within hmpat 2684.113 kb on - strand, within hmpat 2684.136 kb on + strand, within hmpat 2684.136 kb on + strand, within hmpat 2684.146 kb on - strand, within hmpat 2684.146 kb on - strand, within hmpat 2684.146 kb on - strand, within hmpat 2684.146 kb on - strand, within hmpat 2684.160 kb on - strand, within hmpat 2684.160 kb on - strand, within hmpat 2684.191 kb on - strand, within hmpat 2684.191 kb on - strand, within hmpat 2684.207 kb on + strand, within hmpat 2684.222 kb on + strand, within hmpat 2684.222 kb on + strand, within hmpat 2684.330 kb on + strand, within hmpat 2684.338 kb on - strand, within hmpat 2684.338 kb on - strand, within hmpat 2684.405 kb on - strand, within hmpat 2684.476 kb on - strand, within hmp

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Serine (C)
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2,681,316 - yphH b2550 0.36 -0.6
2,681,433 + yphH b2550 0.46 -2.2
2,681,433 + yphH b2550 0.46 -0.3
2,681,440 + yphH b2550 0.46 -1.0
2,681,612 - yphH b2550 0.61 +0.0
2,681,629 + yphH b2550 0.62 -0.9
2,681,726 - yphH b2550 0.70 +0.3
2,681,771 - yphH b2550 0.74 -0.1
2,681,938 - yphH b2550 0.88 +0.3
2,681,938 - yphH b2550 0.88 +0.3
2,682,052 - +3.0
2,682,121 - -0.2
2,683,781 + -0.9
2,683,789 - +0.4
2,683,874 - -1.6
2,684,075 + hmp b2552 0.18 +0.2
2,684,075 + hmp b2552 0.18 +0.2
2,684,076 - hmp b2552 0.18 -0.1
2,684,076 - hmp b2552 0.18 -0.8
2,684,113 - hmp b2552 0.21 -0.0
2,684,136 + hmp b2552 0.23 -0.9
2,684,136 + hmp b2552 0.23 +0.7
2,684,146 - hmp b2552 0.24 -1.8
2,684,146 - hmp b2552 0.24 -0.9
2,684,146 - hmp b2552 0.24 -1.4
2,684,146 - hmp b2552 0.24 -0.6
2,684,160 - hmp b2552 0.25 -0.5
2,684,160 - hmp b2552 0.25 -0.6
2,684,191 - hmp b2552 0.28 -0.7
2,684,191 - hmp b2552 0.28 +0.2
2,684,207 + hmp b2552 0.29 +0.7
2,684,222 + hmp b2552 0.31 +0.4
2,684,222 + hmp b2552 0.31 +0.6
2,684,330 + hmp b2552 0.40 -0.3
2,684,338 - hmp b2552 0.40 +0.4
2,684,338 - hmp b2552 0.40 +1.2
2,684,405 - hmp b2552 0.46 +0.7
2,684,476 - hmp b2552 0.52 -0.7

Or see this region's nucleotide sequence