Experiment: D-Serine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt fdnG and fdnH are separated by 12 nucleotides fdnH and fdnI overlap by 8 nucleotides fdnI and yddM are separated by 406 nucleotides yddM and adhP are separated by 145 nucleotides
b1474: fdnG - formate dehydrogenase-N, alpha subunit, nitrate-inducible (NCBI), at 1,545,425 to 1,548,472
fdnG
b1475: fdnH - formate dehydrogenase-N, Fe-S (beta) subunit, nitrate-inducible (NCBI), at 1,548,485 to 1,549,369
fdnH
b1476: fdnI - formate dehydrogenase-N, cytochrome B556 (gamma) subunit, nitrate-inducible (NCBI), at 1,549,362 to 1,550,015
fdnI
b1477: yddM - predicted DNA-binding transcriptional regulator (RefSeq), at 1,550,422 to 1,550,706
yddM
b1478: adhP - alcohol dehydrogenase (VIMSS), at 1,550,852 to 1,551,862
adhP
Position (kb)
1549
1550
1551 Strain fitness (log2 ratio)
-1
0
1 at 1548.444 kb on - strand at 1548.444 kb on - strand at 1548.465 kb on + strand at 1548.607 kb on - strand, within fdnH at 1548.745 kb on - strand, within fdnH at 1548.745 kb on - strand, within fdnH at 1548.789 kb on + strand, within fdnH at 1548.789 kb on + strand, within fdnH at 1549.042 kb on - strand, within fdnH at 1549.104 kb on + strand, within fdnH at 1549.104 kb on + strand, within fdnH at 1549.200 kb on - strand, within fdnH at 1549.396 kb on - strand at 1549.396 kb on - strand at 1549.813 kb on - strand, within fdnI at 1550.056 kb on - strand at 1550.189 kb on - strand at 1550.189 kb on - strand at 1550.209 kb on - strand at 1550.806 kb on + strand at 1550.833 kb on - strand at 1551.011 kb on + strand, within adhP
Per-strain Table
Position Strand Gene LocusTag Fraction D-Serine (C) remove 1,548,444 - -0.8 1,548,444 - -0.2 1,548,465 + +0.3 1,548,607 - fdnH b1475 0.14 +0.1 1,548,745 - fdnH b1475 0.29 +0.8 1,548,745 - fdnH b1475 0.29 +0.3 1,548,789 + fdnH b1475 0.34 +0.1 1,548,789 + fdnH b1475 0.34 +0.7 1,549,042 - fdnH b1475 0.63 +1.4 1,549,104 + fdnH b1475 0.70 +0.6 1,549,104 + fdnH b1475 0.70 +0.7 1,549,200 - fdnH b1475 0.81 +1.1 1,549,396 - +0.0 1,549,396 - -0.3 1,549,813 - fdnI b1476 0.69 -0.0 1,550,056 - +0.6 1,550,189 - -0.8 1,550,189 - +0.1 1,550,209 - -0.1 1,550,806 + +1.1 1,550,833 - -0.2 1,551,011 + adhP b1478 0.16 +0.5
Or see this region's nucleotide sequence