Strain Fitness in Escherichia coli BW25113 around b1476

Experiment: D-Serine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntfdnG and fdnH are separated by 12 nucleotidesfdnH and fdnI overlap by 8 nucleotidesfdnI and yddM are separated by 406 nucleotidesyddM and adhP are separated by 145 nucleotides b1474: fdnG - formate dehydrogenase-N, alpha subunit, nitrate-inducible (NCBI), at 1,545,425 to 1,548,472 fdnG b1475: fdnH - formate dehydrogenase-N, Fe-S (beta) subunit, nitrate-inducible (NCBI), at 1,548,485 to 1,549,369 fdnH b1476: fdnI - formate dehydrogenase-N, cytochrome B556 (gamma) subunit, nitrate-inducible (NCBI), at 1,549,362 to 1,550,015 fdnI b1477: yddM - predicted DNA-binding transcriptional regulator (RefSeq), at 1,550,422 to 1,550,706 yddM b1478: adhP - alcohol dehydrogenase (VIMSS), at 1,550,852 to 1,551,862 adhP Position (kb) 1549 1550 1551Strain fitness (log2 ratio) -1 0 1at 1548.444 kb on - strandat 1548.444 kb on - strandat 1548.465 kb on + strandat 1548.607 kb on - strand, within fdnHat 1548.745 kb on - strand, within fdnHat 1548.745 kb on - strand, within fdnHat 1548.789 kb on + strand, within fdnHat 1548.789 kb on + strand, within fdnHat 1549.042 kb on - strand, within fdnHat 1549.104 kb on + strand, within fdnHat 1549.104 kb on + strand, within fdnHat 1549.200 kb on - strand, within fdnHat 1549.396 kb on - strandat 1549.396 kb on - strandat 1549.813 kb on - strand, within fdnIat 1550.056 kb on - strandat 1550.189 kb on - strandat 1550.189 kb on - strandat 1550.209 kb on - strandat 1550.806 kb on + strandat 1550.833 kb on - strandat 1551.011 kb on + strand, within adhP

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Serine (C)
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1,548,444 - -0.8
1,548,444 - -0.2
1,548,465 + +0.3
1,548,607 - fdnH b1475 0.14 +0.1
1,548,745 - fdnH b1475 0.29 +0.8
1,548,745 - fdnH b1475 0.29 +0.3
1,548,789 + fdnH b1475 0.34 +0.1
1,548,789 + fdnH b1475 0.34 +0.7
1,549,042 - fdnH b1475 0.63 +1.4
1,549,104 + fdnH b1475 0.70 +0.6
1,549,104 + fdnH b1475 0.70 +0.7
1,549,200 - fdnH b1475 0.81 +1.1
1,549,396 - +0.0
1,549,396 - -0.3
1,549,813 - fdnI b1476 0.69 -0.0
1,550,056 - +0.6
1,550,189 - -0.8
1,550,189 - +0.1
1,550,209 - -0.1
1,550,806 + +1.1
1,550,833 - -0.2
1,551,011 + adhP b1478 0.16 +0.5

Or see this region's nucleotide sequence