Experiment: D-Serine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt entB and entA overlap by 1 nucleotides entA and ybdB are separated by 2 nucleotides ybdB and cstA are separated by 180 nucleotides
b0595: entB - isochorismatase (NCBI), at 626,917 to 627,774
entB
b0596: entA - 2,3-dihydroxybenzoate-2,3-dehydrogenase (NCBI), at 627,774 to 628,520
entA
b0597: ybdB - hypothetical protein (NCBI), at 628,523 to 628,936
ybdB
b0598: cstA - carbon starvation protein (NCBI), at 629,117 to 631,222
cstA
Position (kb) 628
629 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 627.550 kb on - strand, within entB at 627.610 kb on - strand, within entB at 627.619 kb on + strand, within entB at 627.619 kb on + strand, within entB at 627.629 kb on - strand, within entB at 627.706 kb on - strand at 627.751 kb on + strand at 627.825 kb on + strand at 627.950 kb on - strand, within entA at 628.176 kb on + strand, within entA at 628.200 kb on + strand, within entA at 628.208 kb on - strand, within entA at 628.219 kb on - strand, within entA at 628.257 kb on - strand, within entA at 628.287 kb on - strand, within entA at 628.287 kb on - strand, within entA at 628.297 kb on + strand, within entA at 628.297 kb on + strand, within entA at 628.319 kb on - strand, within entA at 628.387 kb on - strand, within entA at 628.463 kb on - strand at 628.463 kb on - strand at 628.601 kb on + strand, within ybdB at 628.609 kb on - strand, within ybdB at 628.618 kb on - strand, within ybdB at 628.640 kb on + strand, within ybdB at 628.640 kb on + strand, within ybdB at 628.756 kb on + strand, within ybdB at 628.756 kb on + strand, within ybdB at 628.790 kb on - strand, within ybdB at 628.923 kb on - strand at 628.923 kb on - strand at 629.097 kb on - strand at 629.097 kb on - strand at 629.099 kb on + strand at 629.100 kb on - strand at 629.140 kb on + strand at 629.140 kb on + strand at 629.140 kb on + strand at 629.182 kb on + strand at 629.189 kb on + strand at 629.189 kb on + strand at 629.275 kb on + strand at 629.275 kb on + strand at 629.330 kb on - strand, within cstA at 629.330 kb on - strand, within cstA at 629.333 kb on + strand, within cstA at 629.333 kb on + strand, within cstA at 629.435 kb on - strand, within cstA at 629.512 kb on - strand, within cstA at 629.630 kb on + strand, within cstA at 629.736 kb on - strand, within cstA at 629.736 kb on - strand, within cstA at 629.779 kb on + strand, within cstA at 629.797 kb on - strand, within cstA at 629.797 kb on - strand, within cstA at 629.798 kb on - strand, within cstA at 629.798 kb on - strand, within cstA at 629.798 kb on - strand, within cstA at 629.859 kb on + strand, within cstA at 629.859 kb on + strand, within cstA
Per-strain Table
Position Strand Gene LocusTag Fraction D-Serine (C) remove 627,550 - entB b0595 0.74 -0.4 627,610 - entB b0595 0.81 +1.0 627,619 + entB b0595 0.82 +0.7 627,619 + entB b0595 0.82 +0.9 627,629 - entB b0595 0.83 +0.7 627,706 - +0.1 627,751 + -1.1 627,825 + +0.4 627,950 - entA b0596 0.24 +0.9 628,176 + entA b0596 0.54 +0.1 628,200 + entA b0596 0.57 +2.4 628,208 - entA b0596 0.58 -0.3 628,219 - entA b0596 0.60 +0.2 628,257 - entA b0596 0.65 +0.8 628,287 - entA b0596 0.69 +0.5 628,287 - entA b0596 0.69 +1.4 628,297 + entA b0596 0.70 -0.9 628,297 + entA b0596 0.70 +1.8 628,319 - entA b0596 0.73 -0.4 628,387 - entA b0596 0.82 -1.0 628,463 - +0.1 628,463 - +1.7 628,601 + ybdB b0597 0.19 -1.1 628,609 - ybdB b0597 0.21 -0.1 628,618 - ybdB b0597 0.23 +0.3 628,640 + ybdB b0597 0.28 +0.0 628,640 + ybdB b0597 0.28 -1.2 628,756 + ybdB b0597 0.56 +0.5 628,756 + ybdB b0597 0.56 -1.0 628,790 - ybdB b0597 0.64 -1.0 628,923 - -0.0 628,923 - -0.9 629,097 - -1.8 629,097 - -0.1 629,099 + -0.3 629,100 - +0.3 629,140 + -0.1 629,140 + +0.1 629,140 + +0.1 629,182 + -1.4 629,189 + +0.9 629,189 + +2.9 629,275 + -1.0 629,275 + -0.9 629,330 - cstA b0598 0.10 -1.1 629,330 - cstA b0598 0.10 +0.9 629,333 + cstA b0598 0.10 -1.8 629,333 + cstA b0598 0.10 -0.8 629,435 - cstA b0598 0.15 -2.1 629,512 - cstA b0598 0.19 -0.8 629,630 + cstA b0598 0.24 -1.6 629,736 - cstA b0598 0.29 -1.6 629,736 - cstA b0598 0.29 -2.8 629,779 + cstA b0598 0.31 -2.1 629,797 - cstA b0598 0.32 -0.9 629,797 - cstA b0598 0.32 -1.6 629,798 - cstA b0598 0.32 -0.4 629,798 - cstA b0598 0.32 -1.7 629,798 - cstA b0598 0.32 -0.3 629,859 + cstA b0598 0.35 +0.9 629,859 + cstA b0598 0.35 +0.1
Or see this region's nucleotide sequence