Experiment: D-Serine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yagR and yagS overlap by 4 nucleotides yagS and yagT overlap by 4 nucleotides
b0284: yagR - predicted oxidoreductase with molybdenum-binding domain (NCBI), at 297,960 to 300,158
yagR
b0285: yagS - predicted oxidoreductase with FAD-binding domain (NCBI), at 300,155 to 301,111
yagS
b0286: yagT - predicted xanthine dehydrogenase, 2Fe-2S subunit (NCBI), at 301,108 to 301,797
yagT
Position (kb) 300
301
302 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 299.169 kb on + strand, within yagR at 299.206 kb on - strand, within yagR at 299.206 kb on - strand, within yagR at 299.218 kb on + strand, within yagR at 299.218 kb on + strand, within yagR at 299.341 kb on - strand, within yagR at 299.341 kb on - strand, within yagR at 299.413 kb on + strand, within yagR at 299.543 kb on + strand, within yagR at 299.952 kb on + strand at 299.952 kb on + strand at 300.038 kb on + strand at 300.109 kb on + strand at 300.109 kb on + strand at 300.176 kb on + strand at 300.181 kb on + strand at 300.181 kb on + strand at 300.196 kb on - strand at 300.268 kb on - strand, within yagS at 300.268 kb on - strand, within yagS at 300.325 kb on + strand, within yagS at 300.385 kb on + strand, within yagS at 300.483 kb on + strand, within yagS at 300.486 kb on - strand, within yagS at 300.486 kb on - strand, within yagS at 300.544 kb on + strand, within yagS at 300.552 kb on - strand, within yagS at 300.581 kb on + strand, within yagS at 300.719 kb on + strand, within yagS at 300.798 kb on + strand, within yagS at 300.829 kb on - strand, within yagS at 300.887 kb on - strand, within yagS at 300.916 kb on - strand, within yagS at 301.099 kb on - strand at 301.177 kb on + strand, within yagT at 301.287 kb on + strand, within yagT at 301.300 kb on + strand, within yagT at 301.300 kb on + strand, within yagT at 301.344 kb on - strand, within yagT at 301.428 kb on - strand, within yagT at 301.483 kb on - strand, within yagT at 301.483 kb on - strand, within yagT at 301.489 kb on - strand, within yagT at 301.580 kb on - strand, within yagT at 301.580 kb on - strand, within yagT at 301.638 kb on - strand, within yagT at 301.638 kb on - strand, within yagT at 301.672 kb on - strand, within yagT at 301.790 kb on - strand at 301.795 kb on + strand at 301.795 kb on + strand at 301.797 kb on + strand at 301.797 kb on + strand at 301.797 kb on + strand at 301.800 kb on - strand at 301.833 kb on - strand at 301.857 kb on - strand at 301.955 kb on + strand at 301.963 kb on - strand at 301.986 kb on + strand at 301.996 kb on - strand at 302.030 kb on + strand at 302.030 kb on + strand at 302.030 kb on + strand at 302.030 kb on + strand at 302.030 kb on + strand at 302.030 kb on + strand at 302.030 kb on + strand at 302.030 kb on + strand at 302.030 kb on + strand at 302.030 kb on + strand at 302.030 kb on + strand at 302.031 kb on + strand at 302.033 kb on + strand at 302.033 kb on + strand at 302.033 kb on + strand at 302.038 kb on - strand at 302.038 kb on - strand at 302.038 kb on - strand at 302.038 kb on - strand at 302.038 kb on - strand at 302.038 kb on - strand at 302.038 kb on - strand at 302.038 kb on - strand at 302.038 kb on - strand at 302.040 kb on + strand at 302.048 kb on - strand at 302.048 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Serine (C) remove 299,169 + yagR b0284 0.55 +0.3 299,206 - yagR b0284 0.57 -0.2 299,206 - yagR b0284 0.57 -0.2 299,218 + yagR b0284 0.57 -0.2 299,218 + yagR b0284 0.57 -1.3 299,341 - yagR b0284 0.63 +0.7 299,341 - yagR b0284 0.63 -0.3 299,413 + yagR b0284 0.66 +0.1 299,543 + yagR b0284 0.72 -1.4 299,952 + +0.2 299,952 + -0.5 300,038 + +0.4 300,109 + +0.2 300,109 + -0.7 300,176 + +0.6 300,181 + -0.4 300,181 + +0.2 300,196 - -0.3 300,268 - yagS b0285 0.12 -0.3 300,268 - yagS b0285 0.12 +0.4 300,325 + yagS b0285 0.18 +4.6 300,385 + yagS b0285 0.24 -0.2 300,483 + yagS b0285 0.34 -1.0 300,486 - yagS b0285 0.35 -0.2 300,486 - yagS b0285 0.35 +0.7 300,544 + yagS b0285 0.41 -0.3 300,552 - yagS b0285 0.41 -0.6 300,581 + yagS b0285 0.45 +0.0 300,719 + yagS b0285 0.59 -0.1 300,798 + yagS b0285 0.67 -0.1 300,829 - yagS b0285 0.70 -0.1 300,887 - yagS b0285 0.76 +0.4 300,916 - yagS b0285 0.80 +0.2 301,099 - +0.1 301,177 + yagT b0286 0.10 +0.1 301,287 + yagT b0286 0.26 +1.2 301,300 + yagT b0286 0.28 -0.6 301,300 + yagT b0286 0.28 -0.3 301,344 - yagT b0286 0.34 -0.5 301,428 - yagT b0286 0.46 +0.4 301,483 - yagT b0286 0.54 -0.5 301,483 - yagT b0286 0.54 +0.0 301,489 - yagT b0286 0.55 +0.1 301,580 - yagT b0286 0.68 +0.0 301,580 - yagT b0286 0.68 +0.7 301,638 - yagT b0286 0.77 +1.2 301,638 - yagT b0286 0.77 +1.7 301,672 - yagT b0286 0.82 -0.5 301,790 - +0.6 301,795 + -1.0 301,795 + -0.9 301,797 + -0.4 301,797 + -0.1 301,797 + +1.2 301,800 - -0.4 301,833 - +0.4 301,857 - -0.2 301,955 + -0.9 301,963 - +0.8 301,986 + -0.1 301,996 - +0.4 302,030 + +0.1 302,030 + +0.3 302,030 + +1.2 302,030 + -2.3 302,030 + +0.0 302,030 + -0.4 302,030 + +0.2 302,030 + +0.7 302,030 + +0.6 302,030 + +0.5 302,030 + -0.0 302,031 + +5.0 302,033 + -0.2 302,033 + +0.3 302,033 + -0.1 302,038 - -1.2 302,038 - -1.1 302,038 - -0.2 302,038 - +0.2 302,038 - +0.2 302,038 - +0.3 302,038 - +0.2 302,038 - -0.4 302,038 - -0.1 302,040 + -1.0 302,048 - -0.0 302,048 - +0.5
Or see this region's nucleotide sequence