Strain Fitness in Pseudomonas sp. RS175 around PFR28_05230

Experiment: Cytidine carbon 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_05229 and PFR28_05230 overlap by 4 nucleotidesPFR28_05230 and PFR28_05231 are separated by 4 nucleotides PFR28_05229: PFR28_05229 - hypothetical protein, at 5,989,217 to 5,990,530 _05229 PFR28_05230: PFR28_05230 - hypothetical protein, at 5,990,527 to 5,991,324 _05230 PFR28_05231: PFR28_05231 - DNA damage-inducible protein F, at 5,991,329 to 5,992,678 _05231 Position (kb) 5990 5991 5992Strain fitness (log2 ratio) -3 -2 -1 0 1at 5989.625 kb on + strand, within PFR28_05229at 5989.640 kb on + strand, within PFR28_05229at 5989.640 kb on + strand, within PFR28_05229at 5989.640 kb on + strand, within PFR28_05229at 5989.641 kb on - strand, within PFR28_05229at 5989.641 kb on - strand, within PFR28_05229at 5989.641 kb on - strand, within PFR28_05229at 5989.646 kb on - strand, within PFR28_05229at 5989.646 kb on - strand, within PFR28_05229at 5989.793 kb on + strand, within PFR28_05229at 5989.793 kb on + strand, within PFR28_05229at 5989.793 kb on + strand, within PFR28_05229at 5989.794 kb on - strand, within PFR28_05229at 5990.153 kb on + strand, within PFR28_05229at 5990.154 kb on - strand, within PFR28_05229at 5990.860 kb on + strand, within PFR28_05230at 5990.860 kb on + strand, within PFR28_05230at 5990.860 kb on + strand, within PFR28_05230at 5990.861 kb on - strand, within PFR28_05230at 5990.861 kb on - strand, within PFR28_05230at 5990.861 kb on - strand, within PFR28_05230at 5990.861 kb on - strand, within PFR28_05230at 5990.861 kb on - strand, within PFR28_05230at 5990.861 kb on - strand, within PFR28_05230at 5990.863 kb on + strand, within PFR28_05230at 5990.863 kb on + strand, within PFR28_05230at 5990.863 kb on + strand, within PFR28_05230at 5990.863 kb on + strand, within PFR28_05230at 5990.863 kb on + strand, within PFR28_05230at 5990.863 kb on + strand, within PFR28_05230at 5990.863 kb on + strand, within PFR28_05230at 5990.863 kb on + strand, within PFR28_05230at 5990.863 kb on + strand, within PFR28_05230at 5990.863 kb on + strand, within PFR28_05230at 5990.863 kb on + strand, within PFR28_05230at 5990.863 kb on + strand, within PFR28_05230at 5990.863 kb on + strand, within PFR28_05230at 5990.864 kb on - strand, within PFR28_05230at 5990.864 kb on - strand, within PFR28_05230at 5990.864 kb on - strand, within PFR28_05230at 5990.864 kb on - strand, within PFR28_05230at 5990.864 kb on - strand, within PFR28_05230at 5990.864 kb on - strand, within PFR28_05230at 5990.884 kb on + strand, within PFR28_05230at 5990.884 kb on + strand, within PFR28_05230at 5990.884 kb on + strand, within PFR28_05230at 5990.884 kb on + strand, within PFR28_05230at 5990.885 kb on - strand, within PFR28_05230at 5990.885 kb on - strand, within PFR28_05230at 5990.885 kb on - strand, within PFR28_05230at 5990.885 kb on - strand, within PFR28_05230at 5991.154 kb on + strand, within PFR28_05230at 5991.184 kb on - strand, within PFR28_05230at 5991.230 kb on - strand, within PFR28_05230at 5991.289 kb on + strandat 5991.289 kb on + strandat 5991.289 kb on + strandat 5991.290 kb on - strandat 5991.558 kb on + strand, within PFR28_05231at 5991.558 kb on + strand, within PFR28_05231at 5991.558 kb on + strand, within PFR28_05231at 5991.558 kb on + strand, within PFR28_05231at 5991.558 kb on + strand, within PFR28_05231at 5991.558 kb on + strand, within PFR28_05231at 5991.558 kb on + strand, within PFR28_05231at 5991.558 kb on + strand, within PFR28_05231at 5991.558 kb on + strand, within PFR28_05231at 5991.558 kb on + strand, within PFR28_05231at 5991.559 kb on - strand, within PFR28_05231at 5991.559 kb on - strand, within PFR28_05231at 5991.559 kb on - strand, within PFR28_05231at 5991.559 kb on - strand, within PFR28_05231at 5991.559 kb on - strand, within PFR28_05231at 5991.559 kb on - strand, within PFR28_05231at 5991.559 kb on - strand, within PFR28_05231at 5991.559 kb on - strand, within PFR28_05231at 5991.559 kb on - strand, within PFR28_05231at 5991.559 kb on - strand, within PFR28_05231at 5991.594 kb on + strand, within PFR28_05231at 5991.603 kb on + strand, within PFR28_05231at 5991.603 kb on + strand, within PFR28_05231at 5991.604 kb on - strand, within PFR28_05231at 5991.604 kb on - strand, within PFR28_05231at 5991.623 kb on + strand, within PFR28_05231at 5991.623 kb on + strand, within PFR28_05231at 5991.623 kb on + strand, within PFR28_05231at 5991.623 kb on + strand, within PFR28_05231at 5991.623 kb on + strand, within PFR28_05231at 5991.623 kb on + strand, within PFR28_05231at 5991.623 kb on + strand, within PFR28_05231at 5991.624 kb on - strand, within PFR28_05231at 5991.624 kb on - strand, within PFR28_05231at 5991.624 kb on - strand, within PFR28_05231at 5991.624 kb on - strand, within PFR28_05231at 5991.624 kb on - strand, within PFR28_05231at 5991.624 kb on - strand, within PFR28_05231at 5991.624 kb on - strand, within PFR28_05231at 5991.624 kb on - strand, within PFR28_05231at 5991.624 kb on - strand, within PFR28_05231

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Per-strain Table

Position Strand Gene LocusTag Fraction Cytidine carbon 10 mM
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5,989,625 + PFR28_05229 0.31 -0.8
5,989,640 + PFR28_05229 0.32 +0.6
5,989,640 + PFR28_05229 0.32 +0.9
5,989,640 + PFR28_05229 0.32 +1.2
5,989,641 - PFR28_05229 0.32 -1.1
5,989,641 - PFR28_05229 0.32 -0.2
5,989,641 - PFR28_05229 0.32 -1.9
5,989,646 - PFR28_05229 0.33 +0.4
5,989,646 - PFR28_05229 0.33 +0.4
5,989,793 + PFR28_05229 0.44 -0.3
5,989,793 + PFR28_05229 0.44 +0.2
5,989,793 + PFR28_05229 0.44 -0.5
5,989,794 - PFR28_05229 0.44 +0.6
5,990,153 + PFR28_05229 0.71 -0.1
5,990,154 - PFR28_05229 0.71 +0.6
5,990,860 + PFR28_05230 0.42 -0.5
5,990,860 + PFR28_05230 0.42 +0.3
5,990,860 + PFR28_05230 0.42 -0.0
5,990,861 - PFR28_05230 0.42 +1.0
5,990,861 - PFR28_05230 0.42 +1.0
5,990,861 - PFR28_05230 0.42 -0.3
5,990,861 - PFR28_05230 0.42 +0.2
5,990,861 - PFR28_05230 0.42 -0.2
5,990,861 - PFR28_05230 0.42 +1.6
5,990,863 + PFR28_05230 0.42 +0.1
5,990,863 + PFR28_05230 0.42 -0.7
5,990,863 + PFR28_05230 0.42 -0.4
5,990,863 + PFR28_05230 0.42 -0.2
5,990,863 + PFR28_05230 0.42 +0.9
5,990,863 + PFR28_05230 0.42 +1.0
5,990,863 + PFR28_05230 0.42 +0.1
5,990,863 + PFR28_05230 0.42 +1.6
5,990,863 + PFR28_05230 0.42 -0.4
5,990,863 + PFR28_05230 0.42 -0.4
5,990,863 + PFR28_05230 0.42 -0.5
5,990,863 + PFR28_05230 0.42 +0.1
5,990,863 + PFR28_05230 0.42 -0.7
5,990,864 - PFR28_05230 0.42 +0.4
5,990,864 - PFR28_05230 0.42 -0.4
5,990,864 - PFR28_05230 0.42 -2.9
5,990,864 - PFR28_05230 0.42 -0.4
5,990,864 - PFR28_05230 0.42 +0.5
5,990,864 - PFR28_05230 0.42 -0.5
5,990,884 + PFR28_05230 0.45 -0.0
5,990,884 + PFR28_05230 0.45 -0.2
5,990,884 + PFR28_05230 0.45 +0.4
5,990,884 + PFR28_05230 0.45 -1.6
5,990,885 - PFR28_05230 0.45 +0.4
5,990,885 - PFR28_05230 0.45 -0.3
5,990,885 - PFR28_05230 0.45 +1.6
5,990,885 - PFR28_05230 0.45 +0.9
5,991,154 + PFR28_05230 0.79 +1.2
5,991,184 - PFR28_05230 0.82 +0.9
5,991,230 - PFR28_05230 0.88 -1.9
5,991,289 + -3.3
5,991,289 + -0.5
5,991,289 + +0.1
5,991,290 - -0.5
5,991,558 + PFR28_05231 0.17 -0.4
5,991,558 + PFR28_05231 0.17 +0.9
5,991,558 + PFR28_05231 0.17 +0.6
5,991,558 + PFR28_05231 0.17 -0.1
5,991,558 + PFR28_05231 0.17 -0.2
5,991,558 + PFR28_05231 0.17 -0.1
5,991,558 + PFR28_05231 0.17 +0.4
5,991,558 + PFR28_05231 0.17 +0.7
5,991,558 + PFR28_05231 0.17 -0.2
5,991,558 + PFR28_05231 0.17 -0.7
5,991,559 - PFR28_05231 0.17 +0.7
5,991,559 - PFR28_05231 0.17 +0.4
5,991,559 - PFR28_05231 0.17 -1.1
5,991,559 - PFR28_05231 0.17 -1.3
5,991,559 - PFR28_05231 0.17 -0.8
5,991,559 - PFR28_05231 0.17 +0.3
5,991,559 - PFR28_05231 0.17 -0.2
5,991,559 - PFR28_05231 0.17 -0.5
5,991,559 - PFR28_05231 0.17 +0.3
5,991,559 - PFR28_05231 0.17 -0.6
5,991,594 + PFR28_05231 0.20 -0.0
5,991,603 + PFR28_05231 0.20 -0.4
5,991,603 + PFR28_05231 0.20 +0.1
5,991,604 - PFR28_05231 0.20 +0.9
5,991,604 - PFR28_05231 0.20 -0.2
5,991,623 + PFR28_05231 0.22 -0.8
5,991,623 + PFR28_05231 0.22 -0.0
5,991,623 + PFR28_05231 0.22 -0.7
5,991,623 + PFR28_05231 0.22 -0.6
5,991,623 + PFR28_05231 0.22 +0.6
5,991,623 + PFR28_05231 0.22 +0.3
5,991,623 + PFR28_05231 0.22 +0.1
5,991,624 - PFR28_05231 0.22 +0.2
5,991,624 - PFR28_05231 0.22 +0.0
5,991,624 - PFR28_05231 0.22 -0.3
5,991,624 - PFR28_05231 0.22 +0.3
5,991,624 - PFR28_05231 0.22 +0.0
5,991,624 - PFR28_05231 0.22 -0.4
5,991,624 - PFR28_05231 0.22 -0.6
5,991,624 - PFR28_05231 0.22 -0.3
5,991,624 - PFR28_05231 0.22 +0.2

Or see this region's nucleotide sequence