Strain Fitness in Pseudomonas sp. RS175 around PFR28_04089

Experiment: Cytidine carbon 10 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Cytidine carbon 10 mM
4,672,005	-				-0.3
4,672,041	+				-0.4
4,672,041	+				+0.2
4,672,042	-				-0.9
4,672,051	+				-0.0
4,672,051	+				+0.2
4,672,051	+				-0.4
4,672,051	+				-0.1
4,672,051	+				-0.0
4,672,051	+				-0.6
4,672,052	-				+0.0
4,672,052	-				+0.1
4,672,052	-				+1.5
4,672,052	-				+1.1
4,672,052	-				+1.0
4,672,052	-				-1.6
4,672,052	-				-0.4
4,672,089	+				+0.0
4,672,089	+				-1.4
4,672,089	+				-0.2
4,672,089	+				+0.1
4,672,090	-				-0.5
4,672,090	-				+0.2
4,672,090	-				-0.9
4,672,090	-				-0.7
4,672,115	+				+0.3
4,672,116	-				+0.1
4,672,116	-				+0.6
4,672,123	+				-0.4
4,672,123	+				+0.9
4,672,124	-				-1.1
4,672,181	+				-0.7
4,672,259	+				+1.3
4,672,259	+				-1.4
4,672,260	-				-0.6
4,672,260	-				-0.6
4,672,262	+				-1.4
4,672,262	+				-1.0
4,672,263	-				+1.0
4,672,263	-				+0.1
4,672,263	-				+0.1
4,672,263	-				-0.4
4,672,263	-				+0.3
4,672,295	+		PFR28_04088	0.13	-2.9
4,672,295	+		PFR28_04088	0.13	-0.9
4,672,295	+		PFR28_04088	0.13	-0.8
4,672,295	+		PFR28_04088	0.13	+0.9
4,672,295	+		PFR28_04088	0.13	-0.2
4,672,295	+		PFR28_04088	0.13	-2.6
4,672,295	+		PFR28_04088	0.13	-1.9
4,672,295	+		PFR28_04088	0.13	-0.4
4,672,295	+		PFR28_04088	0.13	+1.0
4,672,295	+		PFR28_04088	0.13	-0.8
4,672,295	+		PFR28_04088	0.13	-1.1
4,672,296	-		PFR28_04088	0.13	+0.6
4,672,296	-		PFR28_04088	0.13	-1.0
4,672,296	-		PFR28_04088	0.13	-0.3
4,672,296	-		PFR28_04088	0.13	+0.8
4,672,296	-		PFR28_04088	0.13	+0.5
4,672,296	-		PFR28_04088	0.13	-2.1
4,672,296	-		PFR28_04088	0.13	+0.4
4,672,296	-		PFR28_04088	0.13	+0.1
4,672,296	-		PFR28_04088	0.13	-0.7
4,672,296	-		PFR28_04088	0.13	-0.1
4,672,296	-		PFR28_04088	0.13	-0.3
4,672,296	-		PFR28_04088	0.13	-0.6
4,672,296	-		PFR28_04088	0.13	-0.1
4,672,296	-		PFR28_04088	0.13	-0.2
4,672,296	-		PFR28_04088	0.13	-1.2
4,672,296	-		PFR28_04088	0.13	-0.4
4,672,296	-		PFR28_04088	0.13	-1.3
4,672,296	-		PFR28_04088	0.13	-0.5
4,672,296	-		PFR28_04088	0.13	+0.4
4,672,349	+		PFR28_04088	0.20	+1.1
4,672,349	+		PFR28_04088	0.20	-2.4
4,672,349	+		PFR28_04088	0.20	+0.3
4,672,349	+		PFR28_04088	0.20	-0.2
4,672,349	+		PFR28_04088	0.20	-0.6
4,672,350	-		PFR28_04088	0.20	-0.5
4,672,350	-		PFR28_04088	0.20	-0.9
4,672,350	-		PFR28_04088	0.20	-0.4
4,672,350	-		PFR28_04088	0.20	+0.0
4,672,350	-		PFR28_04088	0.20	+0.6
4,672,353	-		PFR28_04088	0.20	-0.4
4,672,353	-		PFR28_04088	0.20	+1.0
4,672,363	+		PFR28_04088	0.22	-0.7
4,672,363	+		PFR28_04088	0.22	-0.4
4,672,364	-		PFR28_04088	0.22	+0.3
4,672,577	+		PFR28_04088	0.50	-0.9
4,672,577	+		PFR28_04088	0.50	+0.5
4,672,577	+		PFR28_04088	0.50	+0.5
4,672,577	+		PFR28_04088	0.50	-0.6
4,672,577	+		PFR28_04088	0.50	-0.7
4,672,577	+		PFR28_04088	0.50	+1.3
4,672,577	+		PFR28_04088	0.50	-0.1
4,672,577	+		PFR28_04088	0.50	-0.1
4,672,577	+		PFR28_04088	0.50	-1.9
4,672,577	+		PFR28_04088	0.50	-1.0
4,672,577	+		PFR28_04088	0.50	-1.2
4,672,577	+		PFR28_04088	0.50	-0.7
4,672,577	+		PFR28_04088	0.50	-0.2
4,672,577	+		PFR28_04088	0.50	+0.1
4,672,578	-		PFR28_04088	0.50	+0.1
4,672,578	-		PFR28_04088	0.50	+0.1
4,672,578	-		PFR28_04088	0.50	-0.8
4,672,578	-		PFR28_04088	0.50	+0.7
4,672,578	-		PFR28_04088	0.50	-0.5
4,672,578	-		PFR28_04088	0.50	-0.1
4,672,578	-		PFR28_04088	0.50	-1.0
4,672,578	-		PFR28_04088	0.50	+0.7
4,672,578	-		PFR28_04088	0.50	-0.6
4,672,719	-		PFR28_04088	0.69	+0.0
4,672,719	-		PFR28_04088	0.69	-0.2
4,672,719	-		PFR28_04088	0.69	+0.7
4,672,787	+		PFR28_04088	0.78	+0.7
4,672,787	+		PFR28_04088	0.78	-0.4
4,672,787	+		PFR28_04088	0.78	-2.2
4,672,787	+		PFR28_04088	0.78	+0.8
4,672,787	+		PFR28_04088	0.78	+0.5
4,672,788	-		PFR28_04088	0.78	-1.8
4,672,788	-		PFR28_04088	0.78	+0.1
4,672,788	-		PFR28_04088	0.78	+0.3
4,672,788	-		PFR28_04088	0.78	+0.1
4,672,788	-		PFR28_04088	0.78	-0.5
4,672,788	-		PFR28_04088	0.78	+0.6
4,672,788	-		PFR28_04088	0.78	-0.2
4,672,788	-		PFR28_04088	0.78	+0.4
4,672,880	+				-1.0
4,672,881	-				-0.1
4,672,881	-				-0.3
4,672,947	+				-0.2
4,672,947	+				-1.1
4,672,947	+				-1.2
4,672,948	-				-0.8
4,672,948	-				+0.7
4,672,948	-				-0.3
4,672,948	-				+0.4
4,672,948	-				-0.6
4,672,948	-				-0.2
4,672,948	-				-0.5
4,672,948	-				+0.0
4,672,948	-				-0.6
4,673,035	+		PFR28_04089	0.32	-1.5
4,673,288	+				+0.2
4,673,289	-				-0.9
4,673,289	-				-0.2
4,673,289	-				-1.9
4,673,492	+		PFR28_04090	0.25	-0.2
4,673,492	+		PFR28_04090	0.25	-0.1
4,673,492	+		PFR28_04090	0.25	-1.1
4,673,492	+		PFR28_04090	0.25	-1.4
4,673,492	+		PFR28_04090	0.25	-0.8
4,673,492	+		PFR28_04090	0.25	-0.6
4,673,492	+		PFR28_04090	0.25	-0.6
4,673,492	+		PFR28_04090	0.25	-1.2
4,673,492	+		PFR28_04090	0.25	+0.6
4,673,492	+		PFR28_04090	0.25	+0.7
4,673,492	+		PFR28_04090	0.25	-0.2
4,673,492	+		PFR28_04090	0.25	-2.6
4,673,493	-		PFR28_04090	0.25	+0.3
4,673,493	-		PFR28_04090	0.25	-1.1
4,673,493	-		PFR28_04090	0.25	+0.7
4,673,493	-		PFR28_04090	0.25	-1.1
4,673,494	+		PFR28_04090	0.26	-0.3
4,673,668	-		PFR28_04090	0.40	-0.2
4,673,748	+		PFR28_04090	0.47	-0.4
4,673,748	+		PFR28_04090	0.47	+0.1
4,673,748	+		PFR28_04090	0.47	-0.5
4,673,748	+		PFR28_04090	0.47	-0.3
4,673,748	+		PFR28_04090	0.47	-0.7
4,673,748	+		PFR28_04090	0.47	-0.6
4,673,748	+		PFR28_04090	0.47	+1.0
4,673,749	-		PFR28_04090	0.47	-0.7
4,673,749	-		PFR28_04090	0.47	-0.7
4,673,749	-		PFR28_04090	0.47	-0.2
4,673,749	-		PFR28_04090	0.47	+0.1
4,673,749	-		PFR28_04090	0.47	-0.3
4,673,749	-		PFR28_04090	0.47	-0.5
4,673,749	-		PFR28_04090	0.47	+0.8
4,673,798	+		PFR28_04090	0.52	+0.6
4,673,798	+		PFR28_04090	0.52	-0.0
4,673,798	+		PFR28_04090	0.52	+1.2
4,673,799	-		PFR28_04090	0.52	-2.0
4,673,799	-		PFR28_04090	0.52	-1.4
4,673,799	-		PFR28_04090	0.52	+0.9
4,673,799	-		PFR28_04090	0.52	+0.4
4,673,799	-		PFR28_04090	0.52	-0.5
4,673,799	-		PFR28_04090	0.52	+0.0
4,673,939	+		PFR28_04090	0.64	+0.6
4,673,939	+		PFR28_04090	0.64	+0.1
4,673,939	+		PFR28_04090	0.64	-1.1
4,673,940	-		PFR28_04090	0.64	-0.9
4,673,942	+		PFR28_04090	0.64	+0.3
4,673,942	+		PFR28_04090	0.64	-1.6
4,673,942	+		PFR28_04090	0.64	-1.5
4,673,942	+		PFR28_04090	0.64	-1.6
4,673,943	-		PFR28_04090	0.64	-1.1
4,673,943	-		PFR28_04090	0.64	-0.3
4,673,943	-		PFR28_04090	0.64	+0.1
4,674,064	-		PFR28_04090	0.74	-1.6
4,674,064	-		PFR28_04090	0.74	+0.6
4,674,093	-		PFR28_04090	0.77	-0.1